Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00971 ATGAGGAGCAAGAGGAGGATGAAGCTCCTGCAGGGGATTATTCTATTAGAGTTCAATCTTTTAGTGGGGCTTGTGACCTCGTTTAGGTATGTTGGTGATGAGATCAATGCAAAATTGGCACAAACTGAAGCTGAAATTCTTCATGAGGCTGTGAAAGAGAAGACAGGAAGTCATGAAGAAGCCAGGAAGCCACTAAGAAAACCATTTGCTACTGAACCTTGGGTCAACTCAGAAGAGAATGTTGGCAACCTTCTCATGGTTTGGAGATTTTTAATTACCTTTGCTGATATTCTGGAATTATGGCCTTTTACTCTTGATGAGTTTGTGCACGCATTTCACGACTATGCACAAACAAAGAAGGACAACAATGTCCCAGACGGCAAGAAAAGCCCTAAGCAAGTCAATTCCCTGAAGAACCTCCTCTGCAAAGAGCCCCTCAAGCTTGTGGATAGTGGCCAATCCCAAAGTACAGTTCTGACACTTGCAAGTACCAGGTTACAGCAGTTTCCCTTTCTGAAGGGTGAATACTTTCAGCAGGTTCTCATCCTTCAGAAGGTTGCACCACTTCAGAGGGTTGCTCCTTTAGAGAGTTGCTGA 597 0.4405 MRSKRRMKLLQGIILLEFNLLVGLVTSFRYVGDEINAKLAQTEAEILHEAVKEKTGSHEEARKPLRKPFATEPWVNSEENVGNLLMVWRFLITFADILELWPFTLDEFVHAFHDYAQTKKDNNVPDGKKSPKQVNSLKNLLCKEPLKLVDSGQSQSTVLTLASTRLQQFPFLKGEYFQQVLILQKVAPLQRVAPLESC. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00971 198 SMART testlast3 78 123 IPR018501 -
Seca6g00971 198 SUPERFAMILY Annexin 19 60 IPR037104 GO:0005509|GO:0005544
Seca6g00971 198 Pfam DDT domain 79 117 IPR018501 -
Seca6g00971 198 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 65 115 IPR044977 GO:0006357
Seca6g00971 198 ProSiteProfiles DDT domain profile. 78 146 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00971 Seca-Chr6 34620121 34626491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00971 65 115 Homeobox Transcription Factor Family AT5G44180 78.431 3.70e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Seca6g00971 DDT 5.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00971 - - lja:Lj4g3v0473640.1 107.071