Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00956 ATGTACAGCAACTTAACTCGAGTGGTGATGGTCTCCTGGCTCTTTCTAGTTTTGATTCTTAACTCAAGCTACACTGCTAGTCTTTCCTCAATGCTCATAGTTAAACAACTACGACCAAATGTCACAGACATTGAGTGGCTGAGGAGGAACAACGTGAAGATTGGTTGCGATGGTGACTCATTTGTTAGGTCATTCCTAGAGAAAGTAGAAAGGTTCAAGTCGGAGAACATCATAAACATTACTGATGAATACAAGTTTGATGATGCATTCGCAAATAATAGCATAGCAGTTGCCTTTCTTGAACTCCCATATGAAAAAGTATTCATTAGTGAATACTGCAGGAGATACAATGGTTCCACTCCCAGAACTAGATTTGGAGGATTAGGCTTTATGTTCCAGAAAGGCTCGTCGTTGGCCAGAGATGTTTCTAAAGCCATATTGCATCTCTCAGAAAAGGCAGAGCTAAAGAGATTGGAAGAAAAGTGGTTGATTAACTCACAAGATTACTCCAACAATACTGAAAGTTTGAAGCTTAGAAGCTTATGGGTTCTGTATGTCATCTCTGGTGGCATTTCTACTACTATCAACCATTCATTGTCTAAAATCCAATCAGCAATGTGA 621 0.3945 MYSNLTRVVMVSWLFLVLILNSSYTASLSSMLIVKQLRPNVTDIEWLRRNNVKIGCDGDSFVRSFLEKVERFKSENIINITDEYKFDDAFANNSIAVAFLELPYEKVFISEYCRRYNGSTPRTRFGGLGFMFQKGSSLARDVSKAILHLSEKAELKRLEEKWLINSQDYSNNTESLKLRSLWVLYVISGGISTTINHSLSKIQSAM. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00956 206 Pfam Ligand-gated ion channel 3 189 IPR001320 GO:0015276|GO:0016020
Seca6g00956 206 Gene3D - 108 170 - -
Seca6g00956 206 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 4 193 IPR015683 -
Seca6g00956 206 SUPERFAMILY Periplasmic binding protein-like II 23 163 - -
Seca6g00956 206 Gene3D - 2 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00956 Seca-Chr6 33758021 33759224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00956 3 189 Ion Channels AT3G51480 36.923 3.06e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00956 - - lja:Lj6g3v2006160.1 330.487