Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00937 ATGGAGATGGTTTCATCCGCCTCCGACGGTGGTTCCAAGACGAGGGACATCGACGGCCTCCTGGCCGGCGTTGGCTACAAAGTCCGTTCATCGGAGCTGAATCAAGTGGCTCAAAACATCGAACGGTTGGAGAACGCGATTGTGAACTCATCTGCTGACATTTCTGAACTCGCTTCGGAAACGGTTCACTACGATCCGTCCGATATAGGGACGTGGGTGGACACTCTTCTCTCTGGGCTCGACCACACCGTAACGTTACCCTGCGATCTCTCTGAACTATCCAGTACTGCTCCTCCGCTACAACAACACCAATTAATAACCACCGTGGAAGAAGACTCAGGGATAAGGCTCGTCCATATGTTGATGACGTGTGCAGATTCTCTGCAACGTGGCGATCTACCATTGGCTGGCTCTCTAATCGAGGCCATGCAAGGCTTGTTAGCACAGGTTAACACCAACTGCGGAATCGGAAAAGTCGCCGGTTACTTCATCGACGCTCTCAGCCGCCGCATCTTCGGCCAAAACACCGCAATCGTGAGTTCTCCTTACGAGAACGATGTTCTCTACCATCACTACTACGAGGCTTGTCCTTATCTCAAGTTCGCTCACTTCACCGCGAACCAGGCCATCCTTGAAGCCTTCAGCGGCCAAGATTGCGTCCACGTCATCGATTTCAACCTCATGCAGGGTCTTCAATGGCCGGCGCTAATTCAGGCTCTCGCTCTCCGTCCTGGAGGTCCGCCCTTGCTCCGCCTCACCGGCATTGGTCCTCCGTCACCGGATGACCGCGACACGCTCCGAGAAATCGGAGTTCGGCTCGCTGAGTTGGCTCGCTCCGTCAACGTCCGGTTCGCTTTCCGCGGCGTGGCGGCGGCGCGGCTGGAGGATGTGAAGCCGTGGATGCTTCAGGTGAGCCCGAAGGAAGCTGTGGCGGTGAATTCCATCATGCAGCTTCACCGTCTCCTCGGGTCTAAATCCGGCCCGAACAAATCAGGAATCGAAGCGGTGCTTGGCTGGATCCGGAGTTTGAATCCTAAGATCGTGACGGTTGTGGAGCAGGAAGCGAACCATAACGAGGAACGGTTCATGGAGCGGTTCACGGAGGCTCTGCATTATTACTCGACGGTTTTTGATTCGCTGGAGGCTTGTCCGATCGAACCGGAGAAGGCACTGGCGGAGATGTACCTGCAGAGGGAGATATGTAACGTGGTGTGCTGTGAGGGAACGGCTCGGGTGGAGAGGCATGAACCGCTGGCTAAGTGGAGGGATCGGCTCGGGAAAGCCGGGTTCAGACCGCTGCATTTGGGTTCAAACGCTTTCAAGCAAGCCAGCATGCTTTTGACACTGTTTTCAGCTGAGGGTTACTGTGTGGAAGAGAATCAAGGGTGCTTGACTCTGGGTTGGCATAGCCGCCCTCTCATTGCAGCTTCGGCTTGGCAAGCCGTGCCTGTGCGAGAGAGGGAAACGCTGCGTTTCGAGCACTGA 1485 0.5569 MEMVSSASDGGSKTRDIDGLLAGVGYKVRSSELNQVAQNIERLENAIVNSSADISELASETVHYDPSDIGTWVDTLLSGLDHTVTLPCDLSELSSTAPPLQQHQLITTVEEDSGIRLVHMLMTCADSLQRGDLPLAGSLIEAMQGLLAQVNTNCGIGKVAGYFIDALSRRIFGQNTAIVSSPYENDVLYHHYYEACPYLKFAHFTANQAILEAFSGQDCVHVIDFNLMQGLQWPALIQALALRPGGPPLLRLTGIGPPSPDDRDTLREIGVRLAELARSVNVRFAFRGVAAARLEDVKPWMLQVSPKEAVAVNSIMQLHRLLGSKSGPNKSGIEAVLGWIRSLNPKIVTVVEQEANHNEERFMERFTEALHYYSTVFDSLEACPIEPEKALAEMYLQREICNVVCCEGTARVERHEPLAKWRDRLGKAGFRPLHLGSNAFKQASMLLTLFSAEGYCVEENQGCLTLGWHSRPLIAASAWQAVPVRERETLRFEH. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00937 494 SMART DELLA_2 18 90 - -
Seca6g00937 494 Pfam Transcriptional regulator DELLA protein N terminal 18 83 IPR021914 -
Seca6g00937 494 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 99 476 IPR005202 -
Seca6g00937 494 ProSiteProfiles GRAS family profile. 108 480 IPR005202 -
Seca6g00937 494 Pfam GRAS domain family 117 480 IPR005202 -
Seca6g00937 494 Coils Coil 26 60 - -
Seca6g00937 494 Gene3D - 16 80 IPR038088 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00937 Seca-Chr6 33116706 33118190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00937 3 480 GRAS Transcription Factor Family AT1G14920 47.909 3.93e-164 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca6g00937 GRAS 5e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00937 K14494 - gmx:100805968 757.288