Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00935 ATGAAGGACCCAGAAGAGCATCAAGTGAAGTCTAGGAGGCCTCTCCAAAAATCAAGTAGAAGAAAGGGTAGAAGAAGAAGCCAAAGCAAGCAAGATAAATTACAAGAAAGTACAGGACTTGATTCACAAGTACTGGTTCCTTCAGCTACTTGCAAGAGTCTTGTGTTTCCTCGCAGGCCTTGTTATGGCCAGCTTGGGACTAAGTGTCTCATCAAAGCTAACCACTTCCTTGCAGATATATCAGTATCTGACTTGAGCCATTACAATGTTAAAATAACACCTGAAGTAACTTCTCGTAAGACAAACAAGGCTATCATATCAGAGCTTGTTAGGCTTCACAGGAACACTGATTTGGCCATGAGGCTCCCCGTGTTTGATGGAGGAAGAAATCTTTACACTGCTGGTTTGCTTCCTTTTACACACAAAGAATTCAATGTAATGTTGATTGAGGAAGATGATTTTACTGGTTGTACCAGAATTGTTTGTTGCAGGGAAAGAGAATTTAAGGTGGAAATCAAGTATGCAAATCGTGTTAGCATGCAACAACTTCGGGATCTTCTTAGTGGGAAACAAGTGGACACCCCACAAGAAGCGCTTAGTGTCTTTGATATTGTGTTAAGGGAGGTTGCAGCTCAGAGTTATGTTTCAATTGGGAGGTTTCTGTATTCTCCTGATGTAAGAAAACCTCAGCAACTGGGTGGTGGGCTTGAATCATGGCGTGGATTCTACCAGAGTATAAGGCCTACTCAGATGGGATTGTCACTTAACATTGATATGTCATCAATGGCATTTATTGAACCACTGCCAGTAATTGACTTTGTTGCTCAAATTCTTGGAAAAGATGTGCACTCAAAACCTTTGTCAGATGCAGATCGTGTCAAGATTAAAAAGGCATTAAGAGGTGTAAAAGTAGAAGTCACACATAGAGGAAATTTTCGAAGGAAGTACAGAATATCAGGACTGACTTCACAGCCAACAAGGGAGCTTATTTTCCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTTGATTATTTTCAAGAAATGTATGGATATACTATCAAATATGCTCATCTACCTTGCCTTCAAGTAGGAAGCCAAAGGAAGGTGAACTATTTGCCCATGGAGGCATGCAAGATAGTTGGGGGCCAGAGATATACAAAAGGGCTAAATGAAAAGCAGATAACTTCTCTGTTAAAGGTCTCATGCCAGAGACCTCGTGAACAAGAGGCAGACATTTTGCAGACAATTCAACAAAACAATTATGAGAATAATCCCTATGCAAAGGAGTTTGGCATCAACATTGACAACAAACTTGCATCAGTTGAGGCTCGGGTTCTTCCTGCTCCGTGGTTGAAATATCACGAAACTGGAAGAGAGAAAGAATACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGCACTGTAAGATATTGGGCATGTATCAATTTCTCACGAAGTGTACAAGAAAGTACAGCTCGTGGATTTTGCCAACAGTTAGTTCAGATGTGTCAAATCTCAGGCATGGAATTCAGTGAGGACCCTGTGATTCCTGTATATTCAACAAGACCGGATCAGGTAAAGAAGGCTTTGAAGTATGTACATTCTGCTGCTCTAGACAAACTTGATGGGAAAGAGTTAGAATTGCTGATTGCCATTCTTCCAGACAATAATGGTTCTCTTTATGGTATGTTACTACTACATTTGCATTACTTCATAATCATAGTAGAATTAGGATGTATCTGGGGTATAATTACAGAGAATTCAGGTGACCTGAAAAGAATCTGCGAAACAGATCTTGGGTTGATTTCTCAATGCTGCCTTACAAAGCATGTGTTCAAGATTAATAGACAATACCTGGCAAATGTGGCACTAAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTACTTTTGGATGCTTTAAGTTGGAGGATTCCACTAGTTAGTGATATCCCAACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAGGATTCTTGCCCTTCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCAGAAGTAACAAAGTATGCAGGGTTGGTTTGTGCTCAGCCACATCGTGAAGAACTCATCCAAGATCTTTTCAAATGTTGGAAAGATCCACAGCGGGGTGTAGTTTATGGCGGTATGATCAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTTTTGCTATATGAACTTGATGCCATCCGTAAGGCCTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTGTGGTTCAAAAACGGCATCACACTAGACTCTTCTCAAACAATCACGATGACAAAAACAGCACTGATAAGAGTGGGAATATCTTACCTGGTACTGTGGTGGATTCTAAGATCTGTCATCCTACTGAATTCGATTTCTATTTATGCAGTCATGCCGGAATTCAGGGTACAAGTAGACCAGCACACTATCATGTCCTGTGGGACGAGAACAATTTCACTGCAGATGAGATTCAATCTCTAACCAACAACTTATGCTACACCTATGCAAGATGTACACGGTCTGTTTCCGTTGTGCCTCCAGCATACTATGCTCATCTGGCAGCCTACAGAGCTAGATTCTACATGGAACCTGATGTTTCTTCTGAAATTGCTAAACTGCGAGGGGCAAGATCAAAAGATAGGCATGTACGGCCACTGCCTGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTACTGTTGA 2763 0.4115 MKDPEEHQVKSRRPLQKSSRRKGRRRSQSKQDKLQESTGLDSQVLVPSATCKSLVFPRRPCYGQLGTKCLIKANHFLADISVSDLSHYNVKITPEVTSRKTNKAIISELVRLHRNTDLAMRLPVFDGGRNLYTAGLLPFTHKEFNVMLIEEDDFTGCTRIVCCREREFKVEIKYANRVSMQQLRDLLSGKQVDTPQEALSVFDIVLREVAAQSYVSIGRFLYSPDVRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVEVTHRGNFRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFQEMYGYTIKYAHLPCLQVGSQRKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQEADILQTIQQNNYENNPYAKEFGINIDNKLASVEARVLPAPWLKYHETGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSEDPVIPVYSTRPDQVKKALKYVHSAALDKLDGKELELLIAILPDNNGSLYGMLLLHLHYFIIIVELGCIWGIITENSGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPQRGVVYGGMIRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDKNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVSSEIAKLRGARSKDRHVRPLPALKEKVKNVMFYC. 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00935 920 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 50 884 - -
Seca6g00935 920 FunFam Protein argonaute-2 261 387 - -
Seca6g00935 920 SMART PAZ_2_a_3 272 404 IPR003100 GO:0005515
Seca6g00935 920 Pfam N-terminal domain of argonaute 68 206 IPR032474 -
Seca6g00935 920 Pfam Argonaute linker 2 domain 410 454 IPR032472 -
Seca6g00935 920 Pfam Piwi domain 594 882 IPR003165 GO:0003676
Seca6g00935 920 SMART DUF1785_2 215 267 IPR014811 -
Seca6g00935 920 SMART Piwi_a_2 587 883 IPR003165 GO:0003676
Seca6g00935 920 MobiDBLite consensus disorder prediction 14 28 - -
Seca6g00935 920 ProSiteProfiles PAZ domain profile. 268 382 IPR003100 GO:0005515
Seca6g00935 920 SUPERFAMILY PAZ domain 263 422 IPR036085 GO:0005515
Seca6g00935 920 CDD PAZ_argonaute_like 267 381 - -
Seca6g00935 920 Gene3D - 446 646 - -
Seca6g00935 920 ProSiteProfiles Piwi domain profile. 556 883 IPR003165 GO:0003676
Seca6g00935 920 Pfam Argonaute linker 1 domain 216 265 IPR014811 -
Seca6g00935 920 SUPERFAMILY Ribonuclease H-like 546 884 IPR012337 -
Seca6g00935 920 Pfam Mid domain of argonaute 465 542 IPR032473 -
Seca6g00935 920 Gene3D paz domain 262 386 - -
Seca6g00935 920 CDD Piwi_ago-like 426 882 IPR045246 -
Seca6g00935 920 Gene3D - 652 920 IPR036397 GO:0003676
Seca6g00935 920 MobiDBLite consensus disorder prediction 1 40 - -
Seca6g00935 920 Pfam PAZ domain 272 398 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00935 Seca-Chr6 33023503 33039154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00935 56 920 Eukaryotic Initiation Factors Gene Family AT5G43810 70.213 0.0 1322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00935 K11593 - gmx:100810235 1585.47