Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00927 ATGATGGATGAGATTTATTGGAGTGATCCAAATTTTCTTAAAGCTATTAAGCCATATGCTTGGTCATATTCAATTTCTAAGACATTGGCAGTGAAGGCAGTTCTTGAATTTGGAAAAGGACCATGGAGTCCTGAAGAAGATGAAAAGCTAAAGGAGTACATAGAGAAACATGGGACTGAAGGGAACTGGATAGCCCTCCCACAGAAAGCTGGTAAGTGTTTGTTTTCTACCTTCCTACCTTGTTCTTCTCATATTCAGAACTCAGAAGCTAATTGTGTTAGTGTGGCTTTGGTTTTGTATTTGCAAAGTCTCAAATCATGGTTTAAGCAACAACTTATCTCATAG 345 0.3797 MMDEIYWSDPNFLKAIKPYAWSYSISKTLAVKAVLEFGKGPWSPEEDEKLKEYIEKHGTEGNWIALPQKAGKCLFSTFLPCSSHIQNSEANCVSVALVLYLQSLKSWFKQQLIS. 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00927 114 CDD SANT 41 63 IPR001005 -
Seca6g00927 114 Coils Coil 109 114 - -
Seca6g00927 114 Pfam Myb-like DNA-binding domain 39 70 IPR001005 -
Seca6g00927 114 ProSiteProfiles Myb-like domain profile. 39 69 IPR001005 -
Seca6g00927 114 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 59 IPR017930 -
Seca6g00927 114 Gene3D - 37 91 - -
Seca6g00927 114 PANTHER OS09G0431300 PROTEIN 39 73 - -
Seca6g00927 114 SUPERFAMILY Homeodomain-like 38 69 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00927 Seca-Chr6 32394433 32394865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00927 39 71 MYB Transcription Factor Family AT2G36890 81.818 1.04e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca6g00927 Myb_DNA-binding 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00927 K09422 - gmx:100820139 72.7886