Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00923 ATGTCATTGAAGATTCTCCTCCACGCTTGGTGGCGTGTGGCAACTGTTATCTTCTTTACTACTACGCTTGTTACACAATTGAGTGAGCGAGTCAACGCGGAGCCGACTCAGGACAAGCAAGCTCTCCTCGCTTTCATTTCCCGAACCCCACACGCGAACCGAGTCCAATGGAACGCTTCCGACTCGGCTTGCAACTGGTTCGGTGTCCAATGCCACGCTTCACGTTCCTTCATTCTCTCTCTTCATCTTCCCGCCGTTGGCCTTGTGGGTCCCATCCCACCCAACACCATCGGTCGTCTCACCCAACTCCGCGTCCTTAGTCTCCGCTCCAACGGCCTCACCGGCGAGATCCCTGCAGATTTCTCCAACCTCACTCTCCTCCGTAACCTCTACCTCCAGAACAACAAATTCTCAGGCGAGTTTCCAACTAGCTTGACTCGGATGACTCGGTTGACTCGCCTAGAACTTTCCTTCAACAACTTCACAGGCACTATCCCTTTCTCAATCAACAATCTCACCCACTTGACCGGTCTTTTCTTGGAAAATAACCGTTTCTCCGGTAACCTTCCAAGCATTACAGCCAAATTAGTCAACTTCAATGTCTCCAATAACCGCCTCAACGATTCCATCCCAAAGACACTCTCCAATTTCCCTGCGTCTTCCTTTGCCGGAAACCTAGATCTCTGTGGCGGACCCTTGAAACCGTGCAACCCGTTCTTCCCCGCTCCGGCGCCGTCTCCTTCCGCCGTTTCACCTCCGACTCATCTCAACAAGTCCAAGAAGCTCTCCACTGCCGCCATTGTCGCAATTGCGGTCGGGTCTGCCGTGGTTGCGATTCTGATTCTGTTGCTAATCCTCTTGCTTTGCTGTCGCCGGCGTCGGCGACCGGCGAAGCCGCCGCAGGATGTGGTGGCGGCACGGGCGATGCCGGCGGCGGAAGGAGGAACCTCGTCTTCGAAGGATGATGTTACTGGTTCGGCGGAGGCTGCAGAGAGGAACAAGCTGGTGTTCTTGGAAGGTGGGGTTTATAGCTTCGATTTGGAGGATTTGTTGAGGGCTTCTGCGGAGGTTTTGGGAAAGGGAAGCATGGGGACTTCTTATAAGGCGGTTTTGGAGGATGGGACTACTGTGGTGGTGAAGAGGTTGAAGGATGTGATTGTTACGAAGAGAGAGTTCGAAACGCAAATGGAAGTTATTGGGAAGATTAAGCATGAGAATGTGGTTCCTCTTAGAGCGTTTTACTTCTCAAAGGATGAGAAATTGCTTGTTTACGATTACATGGCTGCCGGAAGCTTGTCTGCTCTGCTTCACGGGAGCAGAGGGTCTGGGCGAACACCGCTAGACTGGGACAGCCGAATGAAAATAGCACTTGGAGCAGCAAGAGGCTTAGCATGCTTACACGTGTCAGGAAAAGTGGTCCACGGCAACATCAAATCCTCCAACATCCTCCTCCGTCAGAACCACGAACCCTCCGTTTCGGACTTCGGACTCAACCCGATATTCGGAAGCTCCGCCCCGCCTAACCGGGTCGCGGGTTATCGGGCCCCGGAGGTTCTAGAAACCCGAAAGTCCACCTTCAAATCTGACGTGTACAGTTTTGGCGTTTTGCTGCTGGAGCTTTTAACTGGAAAAGCACCGAACCAAGCTTCACTAGGTGAAGAGGGCATTGACCTTCCACGGTGGGTGCAATCCGTGGTTCGCGAAGAGTGGACCGCGGAAGTGTTCGACGCGGAACTCATGAGGTTCCATAACATTGAGGAAGAGATGGTTCAGTTGTTGCAGATTGCGATGACGTGCGTTTCGCTTGTGCCAGATCAGAGGCCCACTATGCAAGAAGTGGTGCGCATGATTGAAGATATTAACCGCAGCGAGACCGATGAAGGGTTGCGCCAATCGTCTGATGATCCTTCTAAAGGATCGGACGGTCACACGCCCCCTCAAGAGTCTAGGACGACACCTAGATCGGACACGTCGTAG 1977 0.5301 MSLKILLHAWWRVATVIFFTTTLVTQLSERVNAEPTQDKQALLAFISRTPHANRVQWNASDSACNWFGVQCHASRSFILSLHLPAVGLVGPIPPNTIGRLTQLRVLSLRSNGLTGEIPADFSNLTLLRNLYLQNNKFSGEFPTSLTRMTRLTRLELSFNNFTGTIPFSINNLTHLTGLFLENNRFSGNLPSITAKLVNFNVSNNRLNDSIPKTLSNFPASSFAGNLDLCGGPLKPCNPFFPAPAPSPSAVSPPTHLNKSKKLSTAAIVAIAVGSAVVAILILLLILLLCCRRRRRPAKPPQDVVAARAMPAAEGGTSSSKDDVTGSAEAAERNKLVFLEGGVYSFDLEDLLRASAEVLGKGSMGTSYKAVLEDGTTVVVKRLKDVIVTKREFETQMEVIGKIKHENVVPLRAFYFSKDEKLLVYDYMAAGSLSALLHGSRGSGRTPLDWDSRMKIALGAARGLACLHVSGKVVHGNIKSSNILLRQNHEPSVSDFGLNPIFGSSAPPNRVAGYRAPEVLETRKSTFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMTCVSLVPDQRPTMQEVVRMIEDINRSETDEGLRQSSDDPSKGSDGHTPPQESRTTPRSDTS. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00923 658 Gene3D Ribonuclease Inhibitor 35 194 IPR032675 -
Seca6g00923 658 MobiDBLite consensus disorder prediction 619 637 - -
Seca6g00923 658 Pfam Leucine rich repeat 92 137 IPR001611 GO:0005515
Seca6g00923 658 SUPERFAMILY Protein kinase-like (PK-like) 356 617 IPR011009 -
Seca6g00923 658 SUPERFAMILY L domain-like 57 219 - -
Seca6g00923 658 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 427 631 - -
Seca6g00923 658 FunFam Probable inactive receptor kinase RLK902 35 193 - -
Seca6g00923 658 Gene3D Phosphorylase Kinase; domain 1 318 426 - -
Seca6g00923 658 MobiDBLite consensus disorder prediction 619 658 - -
Seca6g00923 658 MobiDBLite consensus disorder prediction 638 658 - -
Seca6g00923 658 MobiDBLite consensus disorder prediction 299 325 - -
Seca6g00923 658 PANTHER OS05G0588300 PROTEIN 17 630 - -
Seca6g00923 658 FunFam pollen receptor-like kinase 1 321 426 - -
Seca6g00923 658 Gene3D Transferase(Phosphotransferase) domain 1 427 640 - -
Seca6g00923 658 Pfam Leucine rich repeat N-terminal domain 36 71 IPR013210 -
Seca6g00923 658 CDD STKc_IRAK 358 620 - -
Seca6g00923 658 Gene3D Ribonuclease Inhibitor 196 236 IPR032675 -
Seca6g00923 658 ProSiteProfiles Protein kinase domain profile. 352 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00923 658 Pfam Protein kinase domain 355 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00923 Seca-Chr6 32272959 32276298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00923 13 643 Receptor kinase-like Gene Family AT5G58300 53.510 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca6g00923 Pkinase 1.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00923 - - gmx:100784259 970.304