Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00919 ATGGCCATTCTACATTTCATGCTTGTTGTCAACATTCTTTTCTTTTCCTCCCAAATTTCCTCTGCAAATGATACCATTACCCAATTTCAATCACTTGTTGATGGAATAAGAACATTGGTTTCCCAAGATGGAACATTTGAGTTGGGTTTCTTCAATCCAGGTAGTTCCACAAACCGCTACCTAGGAATCTGGTTCAAAAATGTTCCACTAAAAACTGTTGTTTGGGTTGCCAACCGTGACCATCCAATAATCAATGACAACTCTGGCAAGTTAAGCATAAGTAAAGAGGGAAACCTTGTTCTTCAAAGCAAGAATGGCACAGCCACTCATTGGTCAACAAATGCAACAACAAGTGGGTCAAGTGTCATAGCTCAACTCTTAGATTCCGGAAACTTTGTTCTAAGAGATGAGAAAGACAATGATCCTAAAGGTTATTTGTGGCAGAGCTTTGACTATCCTACTGATACAATTTTGCCTGGAATGAAGCTTGGATGGAACCTAACAAGTGGCCTTAACAGACGCCTAATAGCTTGGAAGAATTGGGATGACCCATCTTCTGGTCATCTTACTTTTGGCTTTAAAAGAAGTAACATTCCTGAAATGGAGATGTGGAATGGCACATCAATGCTCTATAGAAGTGGTCCTTGGAATGGAATTCGATACAGTGCTACACCATCATATAACCACCGTCAATTGTTTAATGTGGATTTTGTGAGCAAGAAGGACGAGTATTATTTCAAATACAACCCCAGGGATCCGTCATTGATTTCAAGAATTGTCATTAACCAAACCGTTTATGCTCTTCAGCGCTTCAGATGGATTGAAGGGAATCAAACGTGGAAACGGTATTTGAATATTCCGAGAGATGATTGTGACAACTATAAGCGTTGTGGCTCATTTGGGATATGTGCTATGAATATGATGAGTGAATCCCCTGTGTGCGAGTGTTTAAGGGGATTTGCCCCAAAATCGCCTCAGAACTGGAGTGAAGGGTGTGTGCGCAGTGAAACTTGGGGGTGTGAGGAGAAAAATAAAGACGGTTTCATCAAATTTGAAGACGTGAAAGTCCCAGACACCAATAAATCTTGGATTGATAGAAGTATGACACTTGAGGAATGCAAGGCCAGATGCTGGGAAAATTGTTCCTGTATGGCTTATGCAAACTCAGATATAACTGAAAAAGGAAGTGGTTGCATCATGTGGTTCGGTGATCTATTGGACTTGAGACAGTTGCCAAAATCTGGGCAAGATCTTTATGTTAGATTGGCTGTCTCCCAAAAAGTCCTCTGTCAACCAAACCGGGATGCAAAAGATGGTTCCAAGAAAGTGGTGGTTGTGGTCACAGCCAGTGTTTCATCAATTTTTGTGATGCTTTTAGCTTTCACGTTTATTTATTGGAGGAGCATAACTAAATCTAGAGAGGAAACAGGGAACAAGAGAAAAGTAAAGAAAAACGAAAGCGAAGATCTAGAGCTACCATTGTTTGATTTTGATACAATAGCATGTGCCACTGATAACTTCTCAAATGACAAAAAACTTGGAGAAGGTGGTTTTGGTCCCGTGTATAGGGGCACACTGCCAGATGGACAAAACGTCGCTGTCAAAAGGCTTTCCCATAGCTCTACACAAGGAATAAAAGAATTTAAGAATGAGGTTATATTTTGTTCTAAACTTCAACACCGAAACTTGGTTAAGGTCCTTGGCTGTTGCATTGAAGAACAAGAGAAATTACTCATCTATGAATATATGCCCAATAAAAGCTTAGACTTCTTTCTATTCGATTCCTCTCAAAGTAAATTTTTAGATTGGTCTACGCGCTTCAATATTATGTGTGGAATTGCTCGGGGTCTTCTTTATCTTCACCAAGACTCCAGATTAAGGATCATACACAGAGATTTAAAAGCAAGTAATATTTTATTAGATAATGATATGAATCCCAAAATTTCGGATTTTGGCTTGGCTCGGATGTGCGGGGGAGATCAGATTGAAGGAAACACAAGCAAAATTGTTGGTACATATGGTTATATGGCTCCTGAATATGCAATTGACGGGATATTCTCCATCAAGTCTGATGTATATAGCTTTGGAATTTTATTATTAGAGATTTTAAGTGGAAAGAAAAATAAAGGACTTTCTTATTCAAACCACAACTACAACCTTATTGGATATGCATGGAGCTTATGGAAAGAGTGCAATGCAATGAAATTCATTGATACTTATCTAGAAGGCTCATACATTCCATCAGAAGCTTTACGATGCATTCATATTGGTCTTTTATGTGTGCAACATCAACCAGATGACAGACCAACTATGTCATCGGTGCTTTCAATGTTGACTAGTGAAAGCATTTTACCTCAACCAAAAGAGCCCGCTTTCTTAATAGAAAAAGATTCAAGTAAGGAAGAATCCATTTCTGGACAAAAGATATACCATTCAACTAATGAAGTCACGGTCTCGGTGTTGGAACCTAGATAG 2475 0.3903 MAILHFMLVVNILFFSSQISSANDTITQFQSLVDGIRTLVSQDGTFELGFFNPGSSTNRYLGIWFKNVPLKTVVWVANRDHPIINDNSGKLSISKEGNLVLQSKNGTATHWSTNATTSGSSVIAQLLDSGNFVLRDEKDNDPKGYLWQSFDYPTDTILPGMKLGWNLTSGLNRRLIAWKNWDDPSSGHLTFGFKRSNIPEMEMWNGTSMLYRSGPWNGIRYSATPSYNHRQLFNVDFVSKKDEYYFKYNPRDPSLISRIVINQTVYALQRFRWIEGNQTWKRYLNIPRDDCDNYKRCGSFGICAMNMMSESPVCECLRGFAPKSPQNWSEGCVRSETWGCEEKNKDGFIKFEDVKVPDTNKSWIDRSMTLEECKARCWENCSCMAYANSDITEKGSGCIMWFGDLLDLRQLPKSGQDLYVRLAVSQKVLCQPNRDAKDGSKKVVVVVTASVSSIFVMLLAFTFIYWRSITKSREETGNKRKVKKNESEDLELPLFDFDTIACATDNFSNDKKLGEGGFGPVYRGTLPDGQNVAVKRLSHSSTQGIKEFKNEVIFCSKLQHRNLVKVLGCCIEEQEKLLIYEYMPNKSLDFFLFDSSQSKFLDWSTRFNIMCGIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARMCGGDQIEGNTSKIVGTYGYMAPEYAIDGIFSIKSDVYSFGILLLEILSGKKNKGLSYSNHNYNLIGYAWSLWKECNAMKFIDTYLEGSYIPSEALRCIHIGLLCVQHQPDDRPTMSSVLSMLTSESILPQPKEPAFLIEKDSSKEESISGQKIYHSTNEVTVSVLEPR. 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00919 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 786 - -
Seca6g00919 824 SMART ntp_6 343 422 IPR003609 -
Seca6g00919 824 PIRSF SRK 1 824 IPR024171 GO:0004674
Seca6g00919 824 ProSiteProfiles PAN/Apple domain profile. 340 423 IPR003609 -
Seca6g00919 824 Gene3D - 17 150 IPR036426 -
Seca6g00919 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Seca6g00919 824 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 769 - -
Seca6g00919 824 ProSiteProfiles Protein kinase domain profile. 507 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00919 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 422 - -
Seca6g00919 824 Gene3D Phosphorylase Kinase; domain 1 467 582 - -
Seca6g00919 824 ProSiteProfiles EGF-like domain profile. 287 326 IPR000742 -
Seca6g00919 824 Pfam Domain of unknown function (DUF3403) 779 824 IPR021820 GO:0004674
Seca6g00919 824 Pfam S-locus glycoprotein domain 211 324 IPR000858 GO:0048544
Seca6g00919 824 ProSiteProfiles Bulb-type lectin domain profile. 23 147 IPR001480 -
Seca6g00919 824 Pfam Protein tyrosine and serine/threonine kinase 509 778 IPR001245 GO:0004672|GO:0006468
Seca6g00919 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 150 - -
Seca6g00919 824 Gene3D Hepatocyte Growth Factor 340 421 - -
Seca6g00919 824 SMART blect_4 30 153 IPR001480 -
Seca6g00919 824 CDD B_lectin 30 153 IPR001480 -
Seca6g00919 824 SUPERFAMILY Protein kinase-like (PK-like) 489 778 IPR011009 -
Seca6g00919 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 471 582 - -
Seca6g00919 824 CDD PAN_AP_plant 340 423 - -
Seca6g00919 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 184 IPR036426 -
Seca6g00919 824 CDD STKc_IRAK 513 779 - -
Seca6g00919 824 Pfam PAN-like domain 340 408 IPR003609 -
Seca6g00919 824 Pfam D-mannose binding lectin 72 179 IPR001480 -
Seca6g00919 824 Gene3D Transferase(Phosphotransferase) domain 1 583 789 - -
Seca6g00919 824 SMART serkin_6 507 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00919 Seca-Chr6 31731344 31734986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00919 433 793 Receptor kinase-like Gene Family AT4G23190 51.781 5.05e-125 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g00919 PK_Tyr_Ser-Thr 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00919 - - gmx:100792537 1094.72