Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00907 ATGCCTTTTGACTTTGAAAGCAACATTAACATCAACACCACATCATCATCATCAAATTCAAAACAAGAAACCAATTCTGACCTTCTTTTCCCTCCTTTCTCCTTTCTTCATTTCCCTTCTCCTTTTGAAGACGATGAGATTTTCCTCGAACATCAACACCTCGATTTCCTCCTTCAATTTCAGCATCAACAGCCTCTAATTGTTAACATGGAAGTTTCAATTAAGAAAAAGTTCCCTTCAAAACACATGGCTTCAGAGCAAATCCCTAGAAAAAGAACTGGCAAGAGAGACAGACACAGCAAAATTAACACAGCAAGAGGACCAAGGGATCGAAGAATGAGACTTTCTCTTGAAGTTGCTAGAAGGTTCTTTGGTCTGCAAGATTTGTTAGGCTTTGATAAAGCAAGCAAGACTGTTGAGTGGTTACTGAACCAATCGAAAGTTGAGATCAATCAATTGGCTTTGAAGAGTGTTGCTTCTTCAACTTCTGAATGTGAAGGTGTGTCTAGCCTTGAAGAGGTTGTAGTGAATAATGGGAAGAACAAGAAAAAAGAGATGAAGGAGGCACAAGCTGTGGTGAAGAGAAAGGTAAAGCATTCTAGAAGGAGTGCAATATTCCATCCTCTTGCTAGGGAGTGTAGGAAAAGGGCAAGAGAAAGGGCAAGAGAGAGGACAAAAGAAAAATTGAGATCAAAGCAATGTAGAGAGGAGGCAACTAATCATAAATTGATGAGTCAATTGGGTATTAATAATCCCTTTGGAACTGGAGAAGAATGTGGAACACAGAGTAGCCAAAGTGTGATTAATCCTTCCTTGAATTTGGTCACTGAGGCTAAAAATCTAAGCTCTCTCTCAATGGAGTATTTGAGGAGTACTAATGTAGAGGCCAACATGATGCATGATGATTCTTTGGCTTTTGTGAACAAAAGGAGCCCATCTATGATTTTAAGTTCTCTGAATAGCTCTGGACTCCTTCAAGAAATAAGCCTCAATTAG 996 0.3926 MPFDFESNININTTSSSSNSKQETNSDLLFPPFSFLHFPSPFEDDEIFLEHQHLDFLLQFQHQQPLIVNMEVSIKKKFPSKHMASEQIPRKRTGKRDRHSKINTARGPRDRRMRLSLEVARRFFGLQDLLGFDKASKTVEWLLNQSKVEINQLALKSVASSTSECEGVSSLEEVVVNNGKNKKKEMKEAQAVVKRKVKHSRRSAIFHPLARECRKRARERARERTKEKLRSKQCREEATNHKLMSQLGINNPFGTGEECGTQSSQSVINPSLNLVTEAKNLSSLSMEYLRSTNVEANMMHDDSLAFVNKRSPSMILSSLNSSGLLQEISLN. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00907 331 ProSiteProfiles TCP domain profile. 95 153 IPR017887 -
Seca6g00907 331 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 22 267 IPR005333 GO:0003700
Seca6g00907 331 MobiDBLite consensus disorder prediction 79 110 - -
Seca6g00907 331 Pfam TCP family transcription factor 94 231 IPR017887 -
Seca6g00907 331 MobiDBLite consensus disorder prediction 79 93 - -
Seca6g00907 331 ProSiteProfiles R domain profile. 211 228 IPR017888 -
Seca6g00907 331 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00907 Seca-Chr6 30814847 30815887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00907 80 225 TCP Transcription Factor Family AT3G18550 41.143 2.82e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca6g00907 TCP 6.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00907 - - pvu:PHAVU_009G200600g 219.164