Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00904 ATGATCATTGGCACCATCTGTGCCATGGCGAATGGCTTGTCGCAACCTCTCATGACCATCATTCTTGGGAAGCTCATCAACGCCTTTGGCTCCAACGTTCCATCCCAAGTTGTTAATGAAGTTTCTAAGGTACACAACCTTGCCTTCTCTCTCTTTCTTTTTTTTTCTTCATTTAAAATCGTTCATGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCACACGCATCCGTGGCTTGTACTTGAAAACTATATTAAAACAAGACATTGCCTTCTTTGACACTGAAACAACAACTGGAGAGGTAATTGGGAGAATGTCTGGTGATACCATTCTTATTCAAGATTCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTTGCTTCAACTTTTTTTGGTGGCTTTGTGATTGCCTTTGTAAGAGGATGGCAACTCGCTCTAGTTTTGCTTTCATGTATACCATTGGTTATCATTGCTGGTGGATTCATGTCTGTGTTGATGTCTAGAATGTCAAGTCGTGGGCAAGCTGCTTATGCAGAAGCAGGAAATGTTGTTGAACAAATAGTGGGAGCCATTAAAACAGTTGCATCTTTTACTGGTGAGAAAAAAGCAAAAGAGAAGTATAATAACAAGTTAAAAGTTGCTTACACTACAATGGTTCAACAAGGAATGGTCTCAGGGCTAGGAATGGGAGTGCTTCTGTTGATTATCTTTTGCACCTATGGACTTGCCATGTGGTACGGTTCCAAACTGGTCATTGAAAAAGGATACATTGGTGGAACTGTCATAACTGTAATCGTAGCTCTTATGACTGGAGGAATGTCACTGGGTCAAGCATCCCCATGTGTAAATGCATTTGCTACAGGTCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCCAAAATTGATGCTTATGACACCAGTGGTGTTATCTTGGAAGACATAAAGGGAGATATTGAGCTCAAAGATGTTTACTTCACATACCCTGCAAGGCCAGATGTGCAGATCTTCACTGGATTCTCATTATTTGTTCCAAATGGCACAACTACTGCTCTAGTGGGTCAAAGTGGAAGTGGGAAGTCTACAGTGATCAGTTTATTAGAAAGATTTTATGATCCTGATGCTGGAGAAGTACTTATTGATGGGGTGAATTTGAAGAGTTTGCAAGTTAGATGGATAAGAGAACAAATTGGGTTGGTTAGTCAAGAACCTATCCTATTTACAACTAGTATCAAAGAGAACATAGCTTATGCGAAAGAAGGTGCAACTGATGAGGAGATAGCAACAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGACAAGCTGCCTCAGGGCCTTGACACAAGGGCAGGGCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCTAAAATCCTCCTTCTTGATGAAGCAACTAGTGCTTTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCATTGGAAAGAGTTATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGTTTGACAACTATTAGAAATGCTGATACCATAACAGTGGTTCATCAGGGAAAAATTGTGGAGAAAGGTTTTCACTTTTGCATGCTTCCTTTATATGTAGGAACTCATGATGAGTTAATCAAGGATGCTGATGGTGCTTATTCTCAACTTATTCGTCTACAAGAAGGAGAAAAAGAAGGTGAAGGTAGCCAGAAGAATGAAGCACATAAGTCAAGTAAGAGCTTAATTTTAGATGGTCACATGGCTAGATCAATAAGCAGAGGTTCATCGGGGAGTCGACACTCTCAGTCCTTTAGCTTTGCTCTTCCTTATCAAAGTGGTGGACAAACAGAAGAAGTGGATGTTGAACAAAGTCATGTTGATAATAAGAAGCCCAAAAGGTTTTCTATAAGACGTTTGGCATACCTGAATAAGCCTGAGGTTCCTGTCTTACTACTTGGATCCATTGCTGCAGCAATAAATGGTGTCGTGTTCCCTACATTTGGCCTCTTGTTTTCATCAGCCATTGTTATGTTCTTTAAACCTCCAGAACAGCAGCAGAAAGATGCTAGGTTCTGGACACTTCTTTATGTGGGTTTAGGTTTAGTTACTCTAGTGGTTTTACCACTCCAAAATTACTTCTTTGGGATTGCTGGTGGAAAACTAATAGAGAGAATTAGTTCCTTAACATTTGAGAAGGTTGTGCATCAAGAAATCAGTTGGTTTGATGACCCTTCAAATTCGAGTGGTGCAGTTGGTGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTTGTTGGTGACACCTTGGCCCTCATGGTGCAAAACATATCAACAATCACAACAGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTCGCTTTAATAATTCTGGCTGTGTCACCCTTGGTCATTATGCAAGGATGCCTTCAAATGAGGTTTCTTAAAGGATTCAGTGCTGATGCCAAGGTTAAGTATGAAGAGGCAAGTCAGGTGGCAACTGATGCTGTTGGTAACATTAGAACTGTTGCATCATTTTGTGCAGAATCGAAGGTGATGGATATGTACAAGAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCAGTTGGGGCTTGTTAGTGGTGCAGGATTAGGTTTCTCTTTTTTGGCTCTATATTGCACAAATGCTTTTTGTTTCTACATAGGATCTGTTCTTGTGCGACACGGCCTTGCAACTTTTTCAGAGGTTTTCAGGGTTTTCTTTTGCATAACAATTACAGCAATTGGTGTTTCCCAGACAAATGCCTTGGCACCAGACACTAACAAGGCCAGAGATTCCGCAGCTTCAATATTTGAAATTCTTGATAGCAAACCTATCATTGACTCAAGCAGCAATGAAGGTAGAACACTAGAATCAGTTAATGGCAATATTGAACTTCAACATGTCAACTTTAATTACCCAACAAGGCCTCATATTCAAATTCTCAAAGATTTGAGCTTAAGAATCCCATCTGGAAAGACTATTGCCTTGGTTGGAGAAAGTGGTTGTGGAAAATCAACAATCATCAGCCTTTTGGAGAGGTTTTATAACCCTAGCTCCGGGCATATACTACTAGATGGTGTGGATATTAGAGAGTTCAGACTAAGTTGGTTGAGGCAACAAATGGGTTTAGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTCGTGCAAACATAGCTTATGGCAAAGAGGGAGGTTCTACAGAGGATGAGATAATTGCAGCAGCTCAAGCAGCCAATGCACACAGGTTCATAAGTTCTCTTCCAAATGGTTATGACACCTCTGTTGGAGAAAGAGGCACACAACTATCAGGAGGGCAAAAGCAACGTATTGCCATTGCAAGAGCCATGCTCAAAGACCCCAAAGTCCTTTTACTTGATGAGGCAACTAGTGCACTTGATGCTGAGTCAGAGCGTGTAGTTCAAGAGGCTCTAGACAGAGTCAGTGTGGATAGAACTACTGTTGTGGTAGCTCACCGTCTTACAACAATTAGAGGGGCTGACATTATAGCAGTAATTAAAAATGGGGTGGTTGCTGAAAAGGGAAAGCATGATGTCTTGATCAAGATTACTGATGGGGCTTATGCTTCATTGGCCGCTTTATATTCCGGTGCAGCATAA 3684 0.4088 MIIGTICAMANGLSQPLMTIILGKLINAFGSNVPSQVVNEVSKVHNLAFSLFLFFSSFKIVHVSCWMVTGERQATRIRGLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDSMGEKVGKFIQLASTFFGGFVIAFVRGWQLALVLLSCIPLVIIAGGFMSVLMSRMSSRGQAAYAEAGNVVEQIVGAIKTVASFTGEKKAKEKYNNKLKVAYTTMVQQGMVSGLGMGVLLLIIFCTYGLAMWYGSKLVIEKGYIGGTVITVIVALMTGGMSLGQASPCVNAFATGQAAAYKMFETIKRKPKIDAYDTSGVILEDIKGDIELKDVYFTYPARPDVQIFTGFSLFVPNGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKSLQVRWIREQIGLVSQEPILFTTSIKENIAYAKEGATDEEIATAITLANAKKFIDKLPQGLDTRAGQNGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQEALERVMSKRTTVVVAHRLTTIRNADTITVVHQGKIVEKGFHFCMLPLYVGTHDELIKDADGAYSQLIRLQEGEKEGEGSQKNEAHKSSKSLILDGHMARSISRGSSGSRHSQSFSFALPYQSGGQTEEVDVEQSHVDNKKPKRFSIRRLAYLNKPEVPVLLLGSIAAAINGVVFPTFGLLFSSAIVMFFKPPEQQQKDARFWTLLYVGLGLVTLVVLPLQNYFFGIAGGKLIERISSLTFEKVVHQEISWFDDPSNSSGAVGARLSTDASTVKSLVGDTLALMVQNISTITTGLVIAFTANWILALIILAVSPLVIMQGCLQMRFLKGFSADAKVKYEEASQVATDAVGNIRTVASFCAESKVMDMYKKKCSGPEKQGVQLGLVSGAGLGFSFLALYCTNAFCFYIGSVLVRHGLATFSEVFRVFFCITITAIGVSQTNALAPDTNKARDSAASIFEILDSKPIIDSSSNEGRTLESVNGNIELQHVNFNYPTRPHIQILKDLSLRIPSGKTIALVGESGCGKSTIISLLERFYNPSSGHILLDGVDIREFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGSTEDEIIAAAQAANAHRFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLKDPKVLLLDEATSALDAESERVVQEALDRVSVDRTTVVVAHRLTTIRGADIIAVIKNGVVAEKGKHDVLIKITDGAYASLAALYSGAA. 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00904 1227 CDD ABC_MTABC3_MDL1_MDL2 323 572 - -
Seca6g00904 1227 ProSitePatterns ABC transporters family signature. 462 476 IPR017871 GO:0005524|GO:0016887
Seca6g00904 1227 ProSitePatterns ABC transporters family signature. 1124 1138 IPR017871 GO:0005524|GO:0016887
Seca6g00904 1227 Pfam ABC transporter transmembrane region 663 934 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g00904 1227 Pfam ABC transporter transmembrane region 1 272 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g00904 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 974 1221 IPR027417 -
Seca6g00904 1227 FunFam ABC transporter B family member 1 974 1224 - -
Seca6g00904 1227 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 2 288 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g00904 1227 SUPERFAMILY ABC transporter transmembrane region 643 965 IPR036640 GO:0005524|GO:0016020
Seca6g00904 1227 FunFam ABC transporter B family member 1 313 573 - -
Seca6g00904 1227 Gene3D ABC transporter type 1, transmembrane domain 51 958 IPR036640 GO:0005524|GO:0016020
Seca6g00904 1227 SMART AAA_5 1011 1198 IPR003593 GO:0016887
Seca6g00904 1227 SMART AAA_5 350 536 IPR003593 GO:0016887
Seca6g00904 1227 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 663 949 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g00904 1227 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 323 559 IPR003439 GO:0005524
Seca6g00904 1227 Pfam ABC transporter 1002 1152 IPR003439 GO:0005524
Seca6g00904 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 571 IPR027417 -
Seca6g00904 1227 CDD ABC_MTABC3_MDL1_MDL2 984 1220 - -
Seca6g00904 1227 Gene3D - 321 585 IPR027417 -
Seca6g00904 1227 SUPERFAMILY ABC transporter transmembrane region 1 307 IPR036640 GO:0005524|GO:0016020
Seca6g00904 1227 FunFam ABC transporter B family member 9 1 318 - -
Seca6g00904 1227 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 296 - -
Seca6g00904 1227 CDD ABC_6TM_Pgp_ABCB1_D2_like 652 967 - -
Seca6g00904 1227 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 984 1221 IPR003439 GO:0005524
Seca6g00904 1227 Gene3D - 974 1225 IPR027417 -
Seca6g00904 1227 PANTHER ABC TRANSPORTER B FAMILY 1 573 IPR039421 -
Seca6g00904 1227 FunFam ABC transporter B family member 1 642 950 - -
Seca6g00904 1227 Pfam ABC transporter 344 490 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00904 Seca-Chr6 30682347 30687198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00904 1 1222 Calmodulin-binding Proteins AT2G36910 44.847 0.0 1032
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00904 K05658 - gmx:100801771 1840.47