Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00897 ATGGCCGCTGCTGCAGCAACAACAACAATGGAGCAAGTCCAATGCTTCGGAAGGAAGAAGAACGCAGTCGCAGTTACTTACTGCAAGAGAGGTCGTGGTCTCATCAAGATCAATGGCTGTCCAATCGAGCTTGTGCAGCCTGAGATTCTCCGCTTCAAGGCCTTTGAGCCCATCCTCCTCCTCGGCAGGCACCGCTTCGCCGGCGTCGACATGCGCATCCGCGTCAAGGGCGGTGGTCACACCTCACAGATCTACGCCATCCGTCAGAGCATCGCTAAGGCTCTCGTTGCCTACTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATCAAGGACATCCTTGTTCGCTATGACCGCACCCTCCTCGTTGCTGATCCCAGGCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGCGCTCGTGCTAGGTTCCAGAAGTCCTACCGTTGA 450 0.5689 MAAAAATTTMEQVQCFGRKKNAVAVTYCKRGRGLIKINGCPIELVQPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00897 149 PANTHER RIBOSOMAL PROTEIN S9 8 146 IPR000754 GO:0003735|GO:0005840|GO:0006412
Seca6g00897 149 Pfam Ribosomal protein S9/S16 17 149 IPR000754 GO:0003735|GO:0005840|GO:0006412
Seca6g00897 149 FunFam 40S ribosomal protein S16 5 149 - -
Seca6g00897 149 SUPERFAMILY Ribosomal protein S5 domain 2-like 12 149 IPR020568 -
Seca6g00897 149 Gene3D - 3 149 IPR014721 -
Seca6g00897 149 ProSitePatterns Ribosomal protein S9 signature. 77 95 IPR020574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00897 Seca-Chr6 30530632 30531081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00897 1 149 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 87.248 5.68e-94 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00897 K02960 - gmx:100527911 281.567