Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00879 ATGACCCCAAGAAGGACTGAACCAGTAGCAGCTGCCCAAGATGGGTTGGGGGAAGAGGATGAAGCTATAGAATGGGTGGCTCAGGTGGAGTCAGGAGTCCAAATAACATTTGAGACCATTCCTACTGGGGGAGATGTTCTCAAGAGAATTCGCTTCAACCGAGAGATGTTTGACAGGCACCAAGCTCAAGCATGGTGGGGTGAGAATTATGACAGGATCATGGAACTTTACAATGTCCAGAGTTTCAACCAAAATGCTATCAGCACATCTCAGAGGGGTAGTAGCCCTGTGGCTGCATGGTTAAATTCAACAGTAAGGACTCACTACTACCAAAGCTCAGCCTCAGGAATCACTTTGGACAACATCGGTGGTGGTGAAAACTTGAATGAAGGAGGGCCATCCAATGAAGCTGCAAGAATATCCAACTCTTCTATACAGGAGACTGAATTCAATAATGGCATTGACAATGACTCATAA 477 0.4591 MTPRRTEPVAAAQDGLGEEDEAIEWVAQVESGVQITFETIPTGGDVLKRIRFNREMFDRHQAQAWWGENYDRIMELYNVQSFNQNAISTSQRGSSPVAAWLNSTVRTHYYQSSASGITLDNIGGGENLNEGGPSNEAARISNSSIQETEFNNGIDNDS. 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00879 158 ProSiteProfiles BRX domain profile. 23 78 IPR013591 -
Seca6g00879 158 Pfam Transcription factor regulating root and shoot growth via Pin3 24 77 IPR013591 -
Seca6g00879 158 PANTHER PROTEIN BREVIS RADIX-LIKE 1 18 144 IPR044532 -
Seca6g00879 158 MobiDBLite consensus disorder prediction 124 158 - -
Seca6g00879 158 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00879 Seca-Chr6 29831004 29831813 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00879 24 77 Major Intrinsic Protein MIP AT1G31880 40.741 2.21e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00879 - - gmx:100819016 128.642