Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00874 ATGGGAGGTGACATGACCCCAGGATGGACTGAACCAATAGCAGCTGCCCAAGATGGGTTGGGGGAAGAGGATGAAGCTATAGAATGGGTGGCTCAGGTGGAGTCAGGAGTCCAAATCACATTTAAGACCATTCCTACTGGGGGATATGTTCTCAAGAGAATTCGCTTTAACCGAGAGATGTTTGACAGGCAGCAAGCTCAAGCATGGTGGGGTGATAATTGTGATAGGATCATGGAACTTTACAATGTCCATAGTTTCAACCAAAATGCTATCAGCACTTCTCAGAGGTTTGAGGATGAGAAAGCTCTCTATTTATTGTTACCTTTTGAACAGCAAAGGGGTAGTAGCCCTGTGGCTGCATGGTTAAATTCAACAGCAAGGACTCACTACTACCAAAGCTCAGCCTCAAGAATCAATTTGGACAACATCAGTGGTGGTGAAAACTTGAATGAAGGAGGGCCATCCAATGAAGCTGCAAGAATATCCAACTCTTCTATACGGGAGACTGAATTCAATAATGGCACTGATAATGACTCAGAATGGGTTGAGCAGGATCAGCCTGGAGTGTTGATCACAATCAGGGTGCTGCCTGATGGAACAAAAGAGATTCACCGTGTCAGGTTCAGCGGCCAAATATTTGATGAGGAAGGTGCCAATCAATGGTGGGAGGAGAACAGGGAGATGATTAAAGCAGATTACCTGTGA 705 0.4539 MGGDMTPGWTEPIAAAQDGLGEEDEAIEWVAQVESGVQITFKTIPTGGYVLKRIRFNREMFDRQQAQAWWGDNCDRIMELYNVHSFNQNAISTSQRFEDEKALYLLLPFEQQRGSSPVAAWLNSTARTHYYQSSASRINLDNISGGENLNEGGPSNEAARISNSSIRETEFNNGTDNDSEWVEQDQPGVLITIRVLPDGTKEIHRVRFSGQIFDEEGANQWWEENREMIKADYL. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00874 234 Pfam Transcription factor regulating root and shoot growth via Pin3 28 81 IPR013591 -
Seca6g00874 234 Pfam Transcription factor regulating root and shoot growth via Pin3 179 233 IPR013591 -
Seca6g00874 234 ProSiteProfiles BRX domain profile. 179 234 IPR013591 -
Seca6g00874 234 ProSiteProfiles BRX domain profile. 27 82 IPR013591 -
Seca6g00874 234 PANTHER PROTEIN BREVIS RADIX-LIKE 1 19 234 IPR044532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00874 Seca-Chr6 29763437 29764619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00874 14 234 Major Intrinsic Protein MIP AT1G31880 42.478 2.07e-53 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00874 - - vum:124826203 211.075