Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00873 ATGACAGAAATGCCACACCGGGTTAAAATATTGGTTGGCACCGTGGCTCCAGCGCTATATAAAGCAGTGCTCGCAATGCAGCAGAACACACAGCAAGAGTTGGAGAACGGAGAGAAACCTGAGAAGAATACCAAAAAGGCTAAGATGTTTCAATGCATAAGTTGTTCGAAGCAGGCAAAGGCAGAGGATGAAGAAGGTCGTGGGAGTGGCACGCCCAAGAGAAAGGAAGCCGTCAAAAGCCTGACTTCGCAGGCAAAGGCAGAGGATGAAGAAGGTCGTGGGAGTGGCACGCCCAAGAGAAAGGAAGCCGTCAAAAGCCTGACTTCGCAGATAAAGGATCTTGTGCTCAAGATTTCAGGTGCCAAGTCCAAAGCAAACACAGGCTCAACTTCAGACAGGGGAAAGAAACCCCTTGCTGATTATGAGACCCTGTCTGAAGGGGTTCAATACCCTTATATGGGAGGTGACATGACCCCAGGAAGGACCGAACCAGTAGCAGCTGCCCAAGATGGGTTGGGGGAAGAGGATGAAGCAAGAGAGTGGGTGGCTCAGGTGGAGCCAGGAGTCCAAATCACATTCGAGACCATTCCTACTGGGGGACATGTTCTCAAGAGAATTCGCTTCAACCGAGACATGTTTGACAGGAACCAAGCTCAAGCATGGTGGGGTGACAATTATGACAGGATAATGGAACTTTACAATGTCCAGAGTTTCAACCAGAATGCTATCAGCACTTCTCAGAGGTTTGAGGATGAGCAAAGGACTCACTACTACCAAAGCTCAGCCTCAGGAATCACTTTGGACAACATTGGTGGTGGTGAAAACTTGAATGAAGGAGGGCCATCCAATGAAGCTGCAAGAACATCCAACTCTTCTATACAGGAGACTGAATTCAATAATGGCATTGACAATGACTCAGAATGGGTTGAGCAGGATCAGCCTGGAGTGTTGATCACAATCAGGGTGCTGCCTAATGGAATAAAAGAGATTCACCGTGTCAAGTTCAGCGGCCAAATATTTGATGAGGAAGGTGCCAAGCAATGGTGGGAGGAGAACAGGGAGAGGATTAAAGAAGATTACCTTGCTTTTGAGTACATCCTTAAGTTTGGTGGGATCATGCGAGAGAAAGACTATCCTTATTCTAGTAATAATGGGGTCTTGTTGGTGGGATATGGTTCTAATGGCTATGCACCCATTCGGATGAAGGAGAAGCCATATTGGATCATTAAAAATTCCTGGGGAGAAAATGGATACTACAAGATTTGCAAGGGACGAAATATTTGTGGGGTGGATTCCATGGTTTCTACTGTGGCGGCTGTTCATACCACCACTCAGTAG 1338 0.4709 MTEMPHRVKILVGTVAPALYKAVLAMQQNTQQELENGEKPEKNTKKAKMFQCISCSKQAKAEDEEGRGSGTPKRKEAVKSLTSQAKAEDEEGRGSGTPKRKEAVKSLTSQIKDLVLKISGAKSKANTGSTSDRGKKPLADYETLSEGVQYPYMGGDMTPGRTEPVAAAQDGLGEEDEAREWVAQVEPGVQITFETIPTGGHVLKRIRFNRDMFDRNQAQAWWGDNYDRIMELYNVQSFNQNAISTSQRFEDEQRTHYYQSSASGITLDNIGGGENLNEGGPSNEAARTSNSSIQETEFNNGIDNDSEWVEQDQPGVLITIRVLPNGIKEIHRVKFSGQIFDEEGAKQWWEENRERIKEDYLAFEYILKFGGIMREKDYPYSSNNGVLLVGYGSNGYAPIRMKEKPYWIIKNSWGENGYYKICKGRNICGVDSMVSTVAAVHTTTQ. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00873 445 MobiDBLite consensus disorder prediction 56 106 - -
Seca6g00873 445 ProSiteProfiles BRX domain profile. 306 361 IPR013591 -
Seca6g00873 445 Pfam Papain family cysteine protease 383 436 IPR000668 GO:0006508|GO:0008234
Seca6g00873 445 MobiDBLite consensus disorder prediction 281 307 - -
Seca6g00873 445 Pfam Transcription factor regulating root and shoot growth via Pin3 306 360 IPR013591 -
Seca6g00873 445 Pfam Transcription factor regulating root and shoot growth via Pin3 179 233 IPR013591 -
Seca6g00873 445 ProSiteProfiles BRX domain profile. 179 234 IPR013591 -
Seca6g00873 445 PANTHER PROTEIN BREVIS RADIX-LIKE 1 49 361 IPR044532 -
Seca6g00873 445 SUPERFAMILY Cysteine proteinases 360 437 IPR038765 -
Seca6g00873 445 MobiDBLite consensus disorder prediction 273 307 - -
Seca6g00873 445 Pfam Transcription factor BRX N-terminal domain 96 125 IPR027988 -
Seca6g00873 445 MobiDBLite consensus disorder prediction 58 100 - -
Seca6g00873 445 Gene3D Cysteine proteinases 356 443 - -
Seca6g00873 445 SMART pept_c1 97 438 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00873 Seca-Chr6 29716297 29720534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00873 38 361 Major Intrinsic Protein MIP AT1G31880 40.838 3.43e-78 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00873 - - ccaj:109789470 267.314