Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00868 ATGGGAGAGGTAGCGCGTGGAGGTTGTTGCCCTCCGATGGATCTGTTCCGTTCGGAGCCGATGCAACTTGTTCAGCTCATCATCCCCATCGAATCCGCTCATCGCACTGTCTCCTACCTTGGCGACCTTGGACTCCTTCAGTTTAAAGATCTCAATGCAGACAAGAGCCCTTTTCAACGGACTTATGCAACTCAGATAAAAAGATGTGGAGAGATGGCACGTAAATTGCGTTTTTTCAAGGAGCAAATGTTGAAGGCAGGTGTTTCCCCAAAACATCCCACAACACAGGTTGATGTGAGCATTGATGACCTTGAGGTAAAACTTACAGAAATCGAGTCAGAGTTAACTGAGATGAATGCAAATGGTGAAAAATTGCAACGCTCATACAATGAACTGGTGGAGTATAAGCTTGTTCTGCAGAAGGCTGGTGACTTTTTCCACTCAGCTCAAAGCCGTGCCATAGAACAGCAGAGAGAATATGAATCACGCCATTTGAGTGATGAATCTATGGAAACACCTCTATTACAGGACCAAGAATTGTTAGGTGATTCATCGAAGCCAGTTAAGTTGGGGTTTCTAGCAGGTCTTGTTCCCAGGGAAAAGTCCATGGCATTTGAGAGAATTTTATTTCGTGCTACTAGAGGCAATGTGTTTTTGAGGCAGGCTGCTGTTGAGGATCCTGTCACAGACCCTGTTTCTGGAGAAAAGACTGAGAAAAATGTGTTTGTGGTCTTCTATGCCGGCGAAAAAGCAAAAGCCAAGATTCTGAAAATCTGTGAAGCCTTTGGTGCTAATCGATACCCTTTTGCTGAGGAACTTGGAAAACAAGCTCAAATGATTACAGAGGTTTCTGGAAAACTATTAGAATTGAAGACCACTATAGATGCTGGACTCCTTCACCGGGTTAACTTGCTAGAAACTATTGGGGCTCATTTTGAGCAATGGAATCTTTTGGTGAGGAAGGAGAAATCCATTAACCACACCCTGAACATGCTAAGCCTTGATGTGACAAAAAAATGTCTTGTGGCTGAGGGGTGGAGTCCTACTTTTGCAACAAAGCAGATCCAGGATGCATTACAGCGGGCAGCAATTGACTCTAATTCTCAAGTCAATGCAATTTTCCAAGTTTTGCATACTAGGGAGTTGCCACCTACCTATTTTCGCACAAACAAATTTACTTCTTCATTTCAAGGAATTATTGACTCATATGGGATTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATTCTGTAGTTACCTTTCCATTTCTTTTTGCTGTGATGTTTGGTGATTGGGGGCATGGAATATGTTTACTACTGGCAGCTCTGTATTTCATAATCAGGGAGAAGAAACTTTCTAGTCAGAAGCTTGATGACATCACGGATATGACTTTTGGAGGTCGTTATGTTATTCTGTTGATGTCACTATTCTCAATCTACACTGGTGTGATCTATAATGAGTTCTTTTCTGTCCCATTTGAACTCTTTGGTCCCTCTGCGTATGCATGTCGTGACCTTTCTTGCAGTGAAGCTACAACAGTGGGTCTGATAAAAGTGCGTCGCACTTACCCTTTTGGAGTGGATCCTGTATGGCATGGTACACGTAGTGAATTACCATTCCTTAACTCACTGAAAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTATAATGAGCTATTGCAATGCCAAATTTTTTAGGAACAACGTAAATACATGGTTCCAATTTATTCCCCAGATGATATTTCTCAACAGTCTATTTGGCTACTTATCCCTTCTTATTATTGTGAAGTGGTGCACTGGTTCTCAAGCTGATTTGTACCATATAATGATATACATGTTCCTGAGCCCAACAGATGATTTGGGTGAAAACCAACTCTTTGTTGGTCAGAAAAATCTGCAGCTTGTGCTTTTGCTTCTGGCTGTTGTAGCTGTGCCCTGGATGCTGTTGCCAAAACCTTTTATTTTGAAGAAGCAACATCAAGATAGGCACGGAGCTGAATCCTATACACCACTTCCAAGCACAGAAGAGAGCTTGCAAGTAGAGTCAAATCATGATTCCCATGGTCATGAGGAATTTGAGTTCAGTGAAGTTTTTGTGCATCAACTCATCCACACCATAGAATTTGTACTTGGAGCAGTATCTAATACAGCTTCTTACCTTCGTCTGTGGGCTCTTAGTCTTGCTCATTCAGAGTTATCAAGTGTATTCTACGAGAAGGTTCTTGTTATGGCATGGGGGTACAATAACGTGATTATCCTGATAGTGGGTATCATTGTCTTCATTTTCGCTACCGTTGGAGTCTTACTTGTCATGGAAACTCTGAGTGCTTTCTTGCATGCGTTGCGACTTCACTGGGTGGAGTTCCAAAACAAGTTTTATGAGGGCGATGGTTACAAGTTCTATCCTTTCTCGTTTTCATTGCTAGATGAAGAGGATGAAATGCTTTAA 2466 0.4189 MGEVARGGCCPPMDLFRSEPMQLVQLIIPIESAHRTVSYLGDLGLLQFKDLNADKSPFQRTYATQIKRCGEMARKLRFFKEQMLKAGVSPKHPTTQVDVSIDDLEVKLTEIESELTEMNANGEKLQRSYNELVEYKLVLQKAGDFFHSAQSRAIEQQREYESRHLSDESMETPLLQDQELLGDSSKPVKLGFLAGLVPREKSMAFERILFRATRGNVFLRQAAVEDPVTDPVSGEKTEKNVFVVFYAGEKAKAKILKICEAFGANRYPFAEELGKQAQMITEVSGKLLELKTTIDAGLLHRVNLLETIGAHFEQWNLLVRKEKSINHTLNMLSLDVTKKCLVAEGWSPTFATKQIQDALQRAAIDSNSQVNAIFQVLHTRELPPTYFRTNKFTSSFQGIIDSYGIAKYQEANPTVYSVVTFPFLFAVMFGDWGHGICLLLAALYFIIREKKLSSQKLDDITDMTFGGRYVILLMSLFSIYTGVIYNEFFSVPFELFGPSAYACRDLSCSEATTVGLIKVRRTYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIMSYCNAKFFRNNVNTWFQFIPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHIMIYMFLSPTDDLGENQLFVGQKNLQLVLLLLAVVAVPWMLLPKPFILKKQHQDRHGAESYTPLPSTEESLQVESNHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLVMAWGYNNVIILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFYPFSFSLLDEEDEML. 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00868 821 PIRSF ATP6V0A1 11 820 IPR026028 GO:0000220|GO:0046961
Seca6g00868 821 Pfam V-type ATPase 116kDa subunit family 39 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca6g00868 821 Coils Coil 101 128 - -
Seca6g00868 821 PANTHER VACUOLAR PROTON ATPASES 15 818 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00868 Seca-Chr6 29642705 29653685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00868 13 819 Primary Pumps ATPases(2) AT4G39080 77.874 0.0 1305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00868 K02154 - gmx:100810062 1465.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00868 6 29642705 29653685 Seca6g00868 6 29642705 29653685 ECH