Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00865 ATGGCTTCCGATTCTACTTCCCCGAATTTCAACAGCAACGGTCCTTCATCCCCTGACGATTCCCTTTCAAGCCCAATCGGAAACACCTTCTCCTCTCCCGGCCAGAGGCGCCGCCGCCGATCTTCCACCCCATCGGCTTTCGGAACCCCGCCGGCACCCCGGTCCCGATTCGCCTCCGATGCCACACCAACTCCCTCACGCCTCCGACAGAGAGGCAGCGCCAGCGGCGGAGGGCGCGTCCCCCCCACGCCAACCTCCACCTCCGACGACTTTCCGGCCTCGTCGGAAGGTGGTGACGGCTACGACATGGACGACGCCAGGCCCACCTACGTGTGGGGCACTAATATAAGCGTTGAAGACGTGAACGATGCGATTCAGAGGTTTCTGAGGGACTTCAGAGAAACTTCGTCTCAGGGTGGTGATGATGATGGGTTGCATTTGCATACCGAAGGGAAGTATGAGAAACTGATCAAACAGGTTATTGAAATTGAGGGGGAATCTCTCGACGTCGATGCACGTGACGTGTTTGATCACGATCCTGATTTGTACACCAAGATGGTAAGGTACCCACTCGAGGTGCTTGCCATTTTCGACTTGGTTTTGATGAACATGGTTAGCCGAATGAAACCCATGTTCGAGAAGCACATTCAGACTAGGATTTTCAATCTCAAAACCTCAACTTCAATGAGAAATTTGAACCCCTCAGGTGAGCTTTTGGTATCTTCTACCATTGTCATTCAAAATTCTGTGTCTTGTTCCAACTTGCAAACAATTAGACTGATATGGGGACTCCATTTTTTAGATATTGAGAGGATGGTGTCGATGAAGGGAATGATTATAAGATGTAGCTCAATCATACCGGAAATTAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATTCTGCACTGACCCAATTGCTGTGGAGAGAGGTCGAATTACTGAGCCTACTGTTTGTTTGAGGGAAGAGTGTCAGTCCAGGAACTCGATGACACTGGTTCACAACCGATGCAGGTTTACTGATAAGCAAATTGTGAGGCTCCAGGAGACACCAGACGAGATACCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGATGCATGACAAGCTGGTAGACACCGGAAAGCCAGGTGATAGAGTTGAGGTGACTGGCATTTATAGGGCTATGAGTGTCAGGGTTGGACCAACTCAGAGAACTGTTAAGTCATTGTTCAAGACGTATATTGATTGTCTTCACATAAAGAAGACTGACAAGACCAGGATGCTGATAGAGGATGCTATGGAGGTTGAAAATAGCCAGGGAAGAAATGCAGAAGAAGTTCTCTTTGACCAAGAAAGGGTGGCTCAACTAAAGGAGCTCTCGAAAAAACCAGATATTTATGAAACGCTTACAAGGTCCTTGGCGCCAAACATCTGGGAGCTAGACGATGTGAAGAGAGGTCTTCTTTGTCAGCTTTTTGGTGGCAGTGCTTTGAAGTTGGCATCTGGTGCTAGCTTCCGTGGTGATATAAATATTCTTCTTGTCGGTGATCCTGGTACAAGTAAGTCCCAACTACTTCAATACATACACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGGAGCTCTGCTGTTGGATTGACTGCTTATGTGACCAAAGACCCTGAAACAGGAGAAACTGTTCTTGAGAGTGGTGCCCTAGTTTTGAGTGACCGAGGTATCTGCTGTATAGATGAATTCGACAAAATGTCTGACAATGCAAGAAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATTATTGCTTCCCTCAATGCTAGGACTTCAGTGTTGGCTTGTGCAAATCCAAGTGGGTCACGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTCTGTCCAGGTTTGATTTAATTTACTTAATTCTTGACAAGGCTGATGAACAGACTGACAGGCGACTTGCCAAACATATTGTTTCCCTACACTTTGAGAATCCCGAGAACATAGAGCAGGATGTGTTGGACATTTCTACACTAACTGATTATGTTAGCTATGCTCGAAAGCACATACACCCACAGCTGTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTACGTGGAAATAAGAAGAAGAGGAAATTTTCCTGGGAGTAGCAAGAAGGTGATAACAGCCACGCCAAGGCAGATTGAGAGTTTAATACGTCTTAGTGAAGCATTGGCTCGGATTCGCTTCTCAGAATGGGTTGAAAAGTCTGATGTACTGGAGGCATTTCGGCTTCTGGAAGTTGCCATGCAGCAGTCTGCAACGGATCACTCTACTGGAACTATTGACATGGATCTTATTACTACCGGAGTTTCGGCAAGTGAAAGAATGAGACGAGAAAGTCTGGTACAATCAACCCGCAACATAATCATGGAGAAAATGCAAATTGGGGGGCCATCCATGCGGTTGTTGGAGTTATTGGAAGAATTAAAGAAGCAGAACACTGGCAGTGAAATCCATCTTACTGATCTAAGGAATGCAATCGCTACACTCGCCGGCGAAGGATTTGTTACCATGCATGGTGACAGCGTCAAAAGATCATGA 2613 0.4669 MASDSTSPNFNSNGPSSPDDSLSSPIGNTFSSPGQRRRRRSSTPSAFGTPPAPRSRFASDATPTPSRLRQRGSASGGGRVPPTPTSTSDDFPASSEGGDGYDMDDARPTYVWGTNISVEDVNDAIQRFLRDFRETSSQGGDDDGLHLHTEGKYEKLIKQVIEIEGESLDVDARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRMKPMFEKHIQTRIFNLKTSTSMRNLNPSGELLVSSTIVIQNSVSCSNLQTIRLIWGLHFLDIERMVSMKGMIIRCSSIIPEIREAIFRCLVCGFCTDPIAVERGRITEPTVCLREECQSRNSMTLVHNRCRFTDKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKTRMLIEDAMEVENSQGRNAEEVLFDQERVAQLKELSKKPDIYETLTRSLAPNIWELDDVKRGLLCQLFGGSALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENIEQDVLDISTLTDYVSYARKHIHPQLSDEAAEELTRGYVEIRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKSDVLEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLVQSTRNIIMEKMQIGGPSMRLLELLEELKKQNTGSEIHLTDLRNAIATLAGEGFVTMHGDSVKRS. 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00865 870 ProSiteProfiles MCM family domain profile. 460 666 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca6g00865 870 MobiDBLite consensus disorder prediction 1 49 - -
Seca6g00865 870 Pfam MCM OB domain 268 390 IPR033762 -
Seca6g00865 870 SMART mcm 257 774 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca6g00865 870 Pfam MCM P-loop domain 448 670 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca6g00865 870 FunFam DNA helicase 441 779 - -
Seca6g00865 870 FunFam DNA helicase 288 340 - -
Seca6g00865 870 Pfam MCM N-terminal domain 124 217 IPR027925 -
Seca6g00865 870 Coils Coil 830 850 - -
Seca6g00865 870 PRINTS Mini-chromosome maintenance (MCM) protein family signature 589 602 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca6g00865 870 PRINTS Mini-chromosome maintenance (MCM) protein family signature 640 648 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca6g00865 870 PRINTS Mini-chromosome maintenance (MCM) protein family signature 501 516 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca6g00865 870 PRINTS Mini-chromosome maintenance (MCM) protein family signature 613 625 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca6g00865 870 PRINTS Mini-chromosome maintenance (MCM) protein family signature 561 575 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca6g00865 870 CDD MCM4 464 772 - -
Seca6g00865 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 786 IPR027417 -
Seca6g00865 870 MobiDBLite consensus disorder prediction 1 106 - -
Seca6g00865 870 Gene3D - 288 340 - -
Seca6g00865 870 ProSitePatterns MCM family signature. 569 577 IPR018525 GO:0003677|GO:0005524|GO:0006260
Seca6g00865 870 Gene3D - 115 223 - -
Seca6g00865 870 Gene3D - 779 865 IPR036388 -
Seca6g00865 870 Gene3D - 444 778 IPR027417 -
Seca6g00865 870 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 122 825 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca6g00865 870 SUPERFAMILY Nucleic acid-binding proteins 148 411 IPR012340 -
Seca6g00865 870 Gene3D - 268 400 IPR012340 -
Seca6g00865 870 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 774 783 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Seca6g00865 870 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 283 296 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Seca6g00865 870 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 476 487 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Seca6g00865 870 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 622 639 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Seca6g00865 870 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 334 346 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Seca6g00865 870 MobiDBLite consensus disorder prediction 79 93 - -
Seca6g00865 870 Pfam MCM AAA-lid domain 686 772 IPR041562 -
Seca6g00865 870 SMART AAA_5 502 652 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00865 Seca-Chr6 29539748 29545421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00865 1 869 Core DNA Replication Machinery Family AT2G16440 71.412 0.0 1239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00865 K02212 - gmx:100782586 1444.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00865 6 29539748 29545421 Seca6g00865 6 29539748 29545421 ECH