Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00849 ATGAAGATCCAGTGTGATGTATGTCACAAAAAGAAGGCCTCCCTGTTCTGCCCTTCAGATGAAGCAGCTCTCTGCCATGGCTGTGATCATACCATCCACCATGCCAACAAGCTTGCAGGCAAACACAAACGCTTCTATCTGCTCCATCCCACCTCCAATTCCAAAGACTCGCCTCTCTGTGATATCTGCCATGAAAGGCGTGCATATCTGTTTTGCCAAGAAGACAGAGCAATAATTTGCAGAAAGTGTGACCTTACAATCCATGGAGTCAACGAACATACCCAGAAACACAACAGGTTTCTTCTAACTGGAGTAAAGCTTGGTGGTGCTGCTTGTTCAGACCCAACATCATTATTTTCCAAAGGCACTGGCTCTGATGTTGGAACCACTGGTTCTACAATAAACAGATCAAGTTCATTTTCAAATGAAAATACCAGTTCTTGTCTCATGGTTGAGCTTGAAGACAATAAGGCTTGTGACACGGGTTCAGTTTCAACAAGCAGCATTTCTGAATACTTGATTGAGACAATTCCCGGTTACTGCATGGAAGACCTTTTTGATGCTTCTTTTGCACCTAATCTTTTTTGTAAGGATTATGAGCATCAATTAGAGTTTGATCAGGACCAAGATCTTCAAGAGATCAACATGTGTTCCTCGTTTCCACTGCAAGCGTGGGTACCACAATCTCAAGTTAGATCACCTCAACTTAGCACTTTGAATGTTCCAAAGATTGATTCTTTAATTGGGATTATGGAAATGCCACAAACGAATAAAGCTAGTGAAGGATACTCGAATTGGAGATACAATGGCTACGCAAGTTACAATGTTCCTTCTATTAGTCCTCCATTGAACAAACGATGTAAACGCTTTCGTTAG 876 0.4178 MKIQCDVCHKKKASLFCPSDEAALCHGCDHTIHHANKLAGKHKRFYLLHPTSNSKDSPLCDICHERRAYLFCQEDRAIICRKCDLTIHGVNEHTQKHNRFLLTGVKLGGAACSDPTSLFSKGTGSDVGTTGSTINRSSSFSNENTSSCLMVELEDNKACDTGSVSTSSISEYLIETIPGYCMEDLFDASFAPNLFCKDYEHQLEFDQDQDLQEINMCSSFPLQAWVPQSQVRSPQLSTLNVPKIDSLIGIMEMPQTNKASEGYSNWRYNGYASYNVPSISPPLNKRCKRFR. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00849 291 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca6g00849 291 CDD Bbox1_BBX-like 5 47 - -
Seca6g00849 291 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca6g00849 291 SMART bboxneu5 55 102 IPR000315 GO:0008270
Seca6g00849 291 CDD Bbox1_BBX-like 59 102 - -
Seca6g00849 291 Pfam B-box zinc finger 57 94 IPR000315 GO:0008270
Seca6g00849 291 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Seca6g00849 291 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 282 - -
Seca6g00849 291 FunFam B-box zinc finger protein 21 1 100 - -
Seca6g00849 291 Gene3D Classic Zinc Finger 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00849 Seca-Chr6 28969526 28971267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00849 1 291 C2C2-CO-like Transcription Factor Family AT1G75540 38.739 4.31e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca6g00849 zf-B_box 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00849 - - gmx:100790232 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00849 6 28969526 28971267 Seca6g00849 6 28969526 28971267 ECH