Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00799 ATGGCTCCTTTCAGCGGCGATGAGACGGCACCTTTTTTTGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTTGGTGTGGCATCGATGGGTGTGATGAGACCAGAGTTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATAATCAGTACTGGTATTAATCCCAAGGCCAAGTCTTATTATCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTTGCTGGGCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGGTATAATTCTTTTGCCTCAAGTATCTGA 390 0.4769 MAPFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYNSFASSI. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00799 129 Gene3D - 10 129 IPR035921 -
Seca6g00799 129 NCBIfam V-type ATPase subunit C 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Seca6g00799 129 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
Seca6g00799 129 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Seca6g00799 129 FunFam V-type proton ATPase proteolipid subunit 10 129 - -
Seca6g00799 129 SUPERFAMILY F1F0 ATP synthase subunit C 86 121 IPR035921 -
Seca6g00799 129 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Seca6g00799 129 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 129 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca6g00799 129 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca6g00799 129 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca6g00799 129 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00799 Seca-Chr6 27082632 27084263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00799 1 124 Primary Pumps ATPases(2) AT2G16510 96.774 1.20e-80 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00799 K02155 - gmx:100815182 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00799 6 27082632 27084263 Seca6g00799 6 27082632 27084263 ECH