Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00798 ATGGCTCCTTTCAGCGGCGATGAGACGGCACCGTTTTTTGGCTTTCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGAACAGCAAAGAGTGGTGTTGGTGTGGCTTCGATGGGTGTGATGAGACCAGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATAATCAGTACTGGTATTAATCCCAAGGCCAAGTCTTATTATCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTGGCTGGGCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGGTATAATTCTTCTGCCTTAGTGTCTGATCTATGA 396 0.4798 MAPFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYNSSALVSDL. 132
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00798 131 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca6g00798 131 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 131 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca6g00798 131 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Seca6g00798 131 NCBIfam V-type ATPase subunit C 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Seca6g00798 131 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
Seca6g00798 131 FunFam V-type proton ATPase proteolipid subunit 10 130 - -
Seca6g00798 131 SUPERFAMILY F1F0 ATP synthase subunit C 86 121 IPR035921 -
Seca6g00798 131 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Seca6g00798 131 Gene3D - 10 128 IPR035921 -
Seca6g00798 131 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Seca6g00798 131 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 124 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca6g00798 Seca-Chr6 27050373 27052251 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00798 1 125 Primary Pumps ATPases(2) AT2G16510 96.000 9.24e-81 233
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00798 K02155 - gmx:100815182 218.394