Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00793 ATGGGTGATAGTGAAGATGCTAATAATAATGACATGATGCAGAGGCTTCACTTGAAACAGATGGAACAATTGAGCATACCCCAATTCAATCAAATGCGAGCAAGGCATCATTTTCAACAGGGTTTGATTGAAGGTAACAACAACAACAACAATAACAAACGAGTTGGGATACCACCTTCACACCCTAACCAGATCCCACCCATTTCACCATATTCTCAGATCCCTGTTTCAAGGCCTCAAATGGCTTCTCCTACACCCTCACATTCTCGATCACTCTCACAACCTTCTTTTTTCTCCCTTGATTCTCTTCCCCCTTTAAGCCCTTCTCCTTTTCGTGACTCTTCTTCAACCTCCATCTCTGACCCTCCTGCTGCTGCTGACGTGTCCATGGAAGATCGTGATGTGAGTTCCCACTCTCTTTTGCCACCTTCATCTCCCTTTGCTAGAGCGTGTCGTGTTGGGGAGAGTTTACCTTTACCCCCTCCTCGCAAAGCTCATAGACGCTCCAACAGTGATATCCCATTTGGGTTTTCAACCGTTTTGCAATCTTCGCCACCACTCATTCCTCTTAGGGGAAGAGAAGTAGCTAAACCTGGTAAGTTGGTCAAAAAGGAAACGAATTGGGAAAAGGGTGTTACTGTTGTTGACCATAATGTAGAGGGTACTGGGGAGAAGAAATCCCCTGAAGGGGAAGTTGTTGATGATCTTTTCTCTGCTTATATGAATTTGGATAGCTTTGATGCCTTGAACTCTTTGGGGACTGATGACAAAAACAACAGTGGTGAAAATCGTGATGATTTGGATAGTAGAGCTAGTGGAACCAAGACTAATGGAGGTGATAGCAGTGATAATGAAGCTGAAAGTAGTGTTAATGAGAGTGGGGATGGTGTGCAAAGGCAACAACAAGGAATGAATAATAATAGTAATAGTTTTGGTGGTGACAAGAGGGAAGGGGTGAAGAGGAGTGCTGGTGGTGATATTGCACCTACCACTAGACACTATAGGAGTGTGTCCATGGATAGTTTCATTGGGAAGTTGAATTTCAATGATGAGTCACCTAAGCTACCACCTTCACCTGGGTTGATTTCACCAGGCAGTAATAATGCAATTGATGGGAATTCATCAGCTTTCAGCTTGGAGTTTGGGAATGGGGAATTCAGTGGCCCTGAATTGAAGAAAATTATGGCTAATGAAAAACTTGCTGAGATTGCTTTGACAGATCCAAAGCGTGCTAAGAGGATTTTGGCTAATAGGCAATCAGCTGCACGTTCCAAAGAACGGAAGATGCGTTACATTTCAGAACTAGAACACAAGGTTCAGACTTTACAGACAGAAGCCACAACACTATCTGCACAGCTTACTCTGTTACAGAGAGATTCTGTTGGACTCACCAACCAGAACAGTGAGTTGAAGTTTCGCCTTCAATCCATGGAACAACAGGCAAAACTCCGAGATGCTCTAAACGAGGCACTTACTGCTGAGGTTCAAAGACTGAAGCTTGCTACAGCTGAGCTGAATGGGGAATCACAACCTTCTAGCTGCTTGATTCCACAACATTCTGTCAACCCTCTGATGTTCCAGCAGCAACAGCATCAGCATCAGCATCCTCCAACTACATCCCAACAAAACATTCATCTTCAACAGCAACAGCAGCAGAATGGTAATGGTAATGCCAACTCTAACCCCGACTTAAAACAATAG 1701 0.4397 MGDSEDANNNDMMQRLHLKQMEQLSIPQFNQMRARHHFQQGLIEGNNNNNNNKRVGIPPSHPNQIPPISPYSQIPVSRPQMASPTPSHSRSLSQPSFFSLDSLPPLSPSPFRDSSSTSISDPPAAADVSMEDRDVSSHSLLPPSSPFARACRVGESLPLPPPRKAHRRSNSDIPFGFSTVLQSSPPLIPLRGREVAKPGKLVKKETNWEKGVTVVDHNVEGTGEKKSPEGEVVDDLFSAYMNLDSFDALNSLGTDDKNNSGENRDDLDSRASGTKTNGGDSSDNEAESSVNESGDGVQRQQQGMNNNSNSFGGDKREGVKRSAGGDIAPTTRHYRSVSMDSFIGKLNFNDESPKLPPSPGLISPGSNNAIDGNSSAFSLEFGNGEFSGPELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKLATAELNGESQPSSCLIPQHSVNPLMFQQQQHQHQHPPTTSQQNIHLQQQQQQNGNGNANSNPDLKQ. 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00793 566 FunFam probable transcription factor PosF21 408 461 - -
Seca6g00793 566 MobiDBLite consensus disorder prediction 74 123 - -
Seca6g00793 566 MobiDBLite consensus disorder prediction 42 58 - -
Seca6g00793 566 Coils Coil 425 459 - -
Seca6g00793 566 MobiDBLite consensus disorder prediction 526 566 - -
Seca6g00793 566 MobiDBLite consensus disorder prediction 42 147 - -
Seca6g00793 566 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 407 470 IPR004827 GO:0003700|GO:0006355
Seca6g00793 566 Pfam bZIP transcription factor 409 463 IPR004827 GO:0003700|GO:0006355
Seca6g00793 566 MobiDBLite consensus disorder prediction 272 313 - -
Seca6g00793 566 CDD bZIP_plant_RF2 410 459 IPR044759 GO:0003700|GO:0006355
Seca6g00793 566 Gene3D - 408 460 - -
Seca6g00793 566 Coils Coil 488 508 - -
Seca6g00793 566 MobiDBLite consensus disorder prediction 253 332 - -
Seca6g00793 566 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 101 558 - -
Seca6g00793 566 SMART brlzneu 405 469 IPR004827 GO:0003700|GO:0006355
Seca6g00793 566 SUPERFAMILY Leucine zipper domain 409 460 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00793 Seca-Chr6 26940578 26945325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00793 1 528 bZIP Transcription Factor Family AT4G38900 57.597 6.02e-174 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca6g00793 bZIP_1 7.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00793 - - gmx:778145 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00793 6 26940578 26945325 Seca6g00793 6 26940578 26945325 ECH