Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00789 ATGGCTGGTTCTTCTGCAAATCTCTCTACTCTCTCTTCTTCATCCTCCTCCTCCTTTTCCAAACCCTCCTCTCTCCCTCACCCTCTCACCAACACTCGCTTCTTCACCAACAAAACCCTTCCAAAACCCACTCTTTCTCGCTCCGTCTCTCTCACCCCCAAAGCCCCTTTCCTCGTTTCCTCCCAAAACCCTAATTCCCATATTGCCCCCGCAAACATCGTTCACGATGAGAAGCCCCGAGAGGAGTGTGGCGTTGTGGGCATCTACGGTGACCCTGAGGCTTCTCGTCTCTGTTACTTGGCCCTTCACGCGCTCCAACACCGTGGCCAAGAAGGTGCTGGAATCGTCACCGTTCACAACAACGTGCTTCAATCCATAACCGGTGTGGGACTTGTTTCTGATGTATTCAATGAATCCAAGCTTGACCAGTTACCTGGGAGTTTGGCTATTGGCCATGTTCGCTACTCAACCGCTGGTCAATCCATGCTTAAAAATGTTCAGCCTTTTGTTGCTGGGTACCGTTTTGGCTCTGTTGGGGTTGCTCATAATGGCAATTTGGTGAACTATCGCACCTTAAGGGCTAAACTTGAAGAGAATGGATCCATTTTCAATACCACTTCTGATACTGAGGTTGTTCTCCATCTTATTGCTACTTCAAAGCATAGACCTTTCATATTGAGGATTGTTGATGCTTGTGAGAAGCTTGAAGGGGCTTATTCCATTGTGTTTGTCACTGAGGATAAGCTTGTTGCTGTCAGGGATCCTTTTGGATTTAGACCGTTGGTTATGGGGAGGAGAAGTAATGGTGCTGTTGTTTTTGCCTCTGAGACTTGTGCACTTGATTTGATTGAAGCTACTTATGAGAGAGAGGTTTATCCAGGTGAGGTTTTAGTGGTGGACAAGAATGGGGTTCAGTCCCTTTGTCTTATGTCTCATCCACAGCCAAAGCAATGTATTTTTGAGCATATATACTTTGCACTGCCAAATTCAGTTGTTTTTGGGAGGTCTGTGTATGAATCTCGCAGGCAATTTGGTGAGATATTGGCTACTGAGAGCCCTGTGGATTGTGATGTTGTGATAGCTGTTCCTGATTCTGGTGTGGTGGCTGCACTTGGTTATGCTGCCAAAGCTGGGGTTCCTTTTCAGCAGGGGCTGATAAGGTCTCACTATGTTGGGAGGACTTTCATTGAGCCATCTCAGAAGATTAGGGACTTTGGTGTGAAGTTGAAGCTCTCACCTGTGCGTGCTGTGCTTGAAGGTAAGAGGGTTGTGGTTGTGGATGACTCAATTGTGAGAGGAACCACATCTTCCAAAATAGTTAGGTTGCTCAAGGAGGCAGGTGCTAAGGAAGTTCACATGAGGATTGCAAGCCCACCAATTATTGGATCTTGTTATTATGGGGTGGATACACCAAGCTCTGAGGAGTTGATCTCTAATAGGATGAGTGTGGAGGAAATAAGGGAGTTTATTGGATCAGATTCACTTGCTTTTCTGCCATTTGATAGCTTGAAGAAGCTTTTAGGGAATGACTCTCCAAATTTCTGCTATGCTTGTTTCTCAGGGAATTACCCTGTTGAGCCAAGAGAACTTAAAGTGAAGAGGGTTGGTGACTTTGTAGATGATGGCTTAAATGGGAGCTGGGAATCTATTGATGGGGGTTGGGTTCAAGCAAACAGAAATCCGAAGGAGGTGAAGGCTGCTACTAGTCTTTGA 1713 0.4606 MAGSSANLSTLSSSSSSSFSKPSSLPHPLTNTRFFTNKTLPKPTLSRSVSLTPKAPFLVSSQNPNSHIAPANIVHDEKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVTVHNNVLQSITGVGLVSDVFNESKLDQLPGSLAIGHVRYSTAGQSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRTLRAKLEENGSIFNTTSDTEVVLHLIATSKHRPFILRIVDACEKLEGAYSIVFVTEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVYPGEVLVVDKNGVQSLCLMSHPQPKQCIFEHIYFALPNSVVFGRSVYESRRQFGEILATESPVDCDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRMSVEEIREFIGSDSLAFLPFDSLKKLLGNDSPNFCYACFSGNYPVEPRELKVKRVGDFVDDGLNGSWESIDGGWVQANRNPKEVKAATSL. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00789 570 Pfam Glutamine amidotransferase domain 161 280 IPR017932 -
Seca6g00789 570 Gene3D - 342 506 IPR029057 -
Seca6g00789 570 CDD PRTases_typeI 345 456 IPR000836 -
Seca6g00789 570 Pfam Phosphoribosyl transferase domain 357 452 IPR000836 -
Seca6g00789 570 NCBIfam amidophosphoribosyltransferase 83 524 IPR005854 GO:0004044|GO:0009113
Seca6g00789 570 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 83 306 IPR029055 -
Seca6g00789 570 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 83 302 IPR017932 -
Seca6g00789 570 Hamap Amidophosphoribosyltransferase [purF]. 82 523 IPR005854 GO:0004044|GO:0009113
Seca6g00789 570 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 81 530 - -
Seca6g00789 570 MobiDBLite consensus disorder prediction 1 38 - -
Seca6g00789 570 SUPERFAMILY PRTase-like 318 529 IPR029057 -
Seca6g00789 570 CDD GPATase_N 83 333 IPR035584 -
Seca6g00789 570 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 83 524 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00789 Seca-Chr6 26906474 26908186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00789 76 556 PRT Gene Family AT2G16570 87.578 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00789 K00764 - gmx:100791919 965.296