Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00748 ATGGAAACCATAGTACTAATGTGCCAAATTGTGGGAGTGGAGCCGTGGTCATTTGAACAGAATTTAGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACAGTTCAGTTGGGTCTTGATTTCTTATCCCCAGAAAAGCCTGGGGGAGGCTGTTGGGAAGATGTCTCTTTATGCAGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTTACTTGGCAAAGATCGGATATGGAGACCCTAATTTAACTGCAATAGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACCTGTGCTTGA 330 0.4364 METIVLMCQIVGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPEKPGGGCWEDVSLCSKFSHQRSSETYLAKIGYGDPNLTAIVSENYEKMVKRRQITCA. 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00748 109 Pfam JmjC domain, hydroxylase 12 45 IPR003347 -
Seca6g00748 109 Gene3D Cupin 6 77 - -
Seca6g00748 109 SUPERFAMILY Clavaminate synthase-like 10 55 - -
Seca6g00748 109 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 56 IPR045109 GO:0032454|GO:0033169
Seca6g00748 109 ProSiteProfiles JmjC domain profile. 1 66 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00748 Seca-Chr6 24852123 24855638 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca6g00748 JmjC 4.1e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00748 K15601 - gmx:100792166 129.413