Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00698 ATGAGTTCGAGATTGAGTGGGAAGGTGAAATGGTTCAACGATCAGAAGGGTTTTGGGTTCATTACCCCTGATGATGGTAGCGAGGAACTCTTTGTTCACCAATCTCAGATTAAAACCCAAGGGTTTCGTAGCCTTGCTGAAGGAGAGTCCGTTGAGTTTCTCATCGACTCTGACCCTGACGGCCGCTCCAAAGCCGTCGATGTCACTGGTCCTGATGGTGCTGATGTCCAGGGAAGCCGACGCGGTGGTGGTGGTGGTGGTGGCGGATTTGGCGGTGGCGGCTACGGCGGTGGAGGCGGCTACGGCGGTGGAGGCAGCAGGGGCTACGGCGGTGGAAGGGGATCTGGCTATGGTGGCGGTGGGAGAGGTGGAGGAAGAGGTGGTGGTGGCGGCGGCGGCGCTTGTTATAACTGTGGTGAGTCAGGTCACATGGCTAGGGACTGCTTCCAGGGTGGAAGCGGCGGCGGTGGAGGAAGGTACGGAGGTGGTGGTGGAGGCGGTGGCGGCGGGAGCTGCTTCAGTTGTGGAGAATCTGGGCATTTCGCGAGAGATTGCCCAGCAAGTGCTCGTTGA 573 0.5934 MSSRLSGKVKWFNDQKGFGFITPDDGSEELFVHQSQIKTQGFRSLAEGESVEFLIDSDPDGRSKAVDVTGPDGADVQGSRRGGGGGGGGFGGGGYGGGGGYGGGGSRGYGGGRGSGYGGGGRGGGRGGGGGGGACYNCGESGHMARDCFQGGSGGGGGRYGGGGGGGGGGSCFSCGESGHFARDCPASAR. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00698 190 Gene3D - 1 82 IPR012340 -
Seca6g00698 190 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Seca6g00698 190 Pfam Zinc knuckle 171 186 IPR001878 GO:0003676|GO:0008270
Seca6g00698 190 Pfam Zinc knuckle 134 150 IPR001878 GO:0003676|GO:0008270
Seca6g00698 190 ProSiteProfiles Zinc finger CCHC-type profile. 172 186 IPR001878 GO:0003676|GO:0008270
Seca6g00698 190 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Seca6g00698 190 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Seca6g00698 190 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Seca6g00698 190 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Seca6g00698 190 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Seca6g00698 190 Gene3D - 167 190 - -
Seca6g00698 190 Gene3D - 126 158 - -
Seca6g00698 190 PANTHER COLD SHOCK DOMAIN PROTEIN 2 106 187 - -
Seca6g00698 190 SUPERFAMILY Retrovirus zinc finger-like domains 125 188 IPR036875 GO:0003676|GO:0008270
Seca6g00698 190 ProSiteProfiles Zinc finger CCHC-type profile. 135 148 IPR001878 GO:0003676|GO:0008270
Seca6g00698 190 MobiDBLite consensus disorder prediction 56 87 - -
Seca6g00698 190 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Seca6g00698 190 SMART csp_8 6 71 IPR011129 GO:0003676
Seca6g00698 190 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Seca6g00698 190 SMART c2hcfinal6 171 187 IPR001878 GO:0003676|GO:0008270
Seca6g00698 190 SMART c2hcfinal6 134 150 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00698 Seca-Chr6 23505669 23506241 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Seca6g00698 CSD 1.4e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00698 - - cam:101490833 183.726