Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00679 ATGGCATTTGAGGAACATGGCTTCACTGAGGAAGTGTTGAATATAGTTTCAAAGTTTGTCAATGGTACCGTTTTAGAAATTCAGGAGAGGTATAAATTTCACAAGGAAAAGAATACGAGGAGTTTGGACCAACATTCTAAAGATTTTGAAGAACCTGGTTCTCTTATTGGCATATCTTTGGATAAAAGCTTGAATGATGCTTTGGCTACTTTTGATAACCTTTTCTGCCTGCAGTGCATTTGTGAAAAGCAGAAAGTATGGTCTGAACCTGAAGCACGAAACTTACTTTCTAGCTTGAAGACCTGCATGGAAGTAGCTAGCTACATGTATGCCGAAGAAGTGTCAATTCCTGATTGTTCAATCATTAACAAAAGTGGACAAATTGATGCAGAGTTAGAAGAATTACTGCTGGGAAATGTGGAACTTACAAGCAGTATACACCTTGTGTATGTCAGGAAATGTGTGGGAAGCAATGTCCTTGTCTTCATCATGGATCTTACTGTGAAAAATATTGTGGAGGATGTTATTGTGCTAAGAGTCAATGTAGAAGTCAACAATGTCCATGCTTTGCAGCAGAACGAGAATGTGACCCAGATTTGTGGTGGTGGTTCATTAGGAGAGCCACCTCGCCTTGGTGATGGTCAATGTGGAAATATAAGGCTTCTTTTAAGGCAAAACCAAAGGATTCTATTAGCAAAGTCTGATGTTGAAGGATGGGGAGCTTTCTTAAAGAACCCAACTAACAAAAATGATTACTTGGGACAGTTCACGGGTGAACTGATCTCTCATTTAGAAGCAGAAAAGCATGGGAAAATGTATGATCGTGCAAACTCCTCTTTCCTTTTTAACATGAATGATCAGGCAAGTGTCTCTATAATTGTAATGTACGTTCTTGATGCTTATCGCAAGGGAGACAAGCTGAAATTTGATAACCACTCAGAAAAACCTAACTGTTATGCAAGGATTATGCTTGTTGGAGGGGATCATCGAGTAGGGATATTTGCCAAGGAACGCATTAAAGCTAGTGAGGAGCTTTTCTTTGATTATTGCTACAGTCCAGAGCAAGCACCAGCATGGTATTAA 1083 0.3943 MAFEEHGFTEEVLNIVSKFVNGTVLEIQERYKFHKEKNTRSLDQHSKDFEEPGSLIGISLDKSLNDALATFDNLFCLQCICEKQKVWSEPEARNLLSSLKTCMEVASYMYAEEVSIPDCSIINKSGQIDAELEELLLGNVELTSSIHLVYVRKCVGSNVLVFIMDLTVKNIVEDVIVLRVNVEVNNVHALQQNENVTQICGGGSLGEPPRLGDGQCGNIRLLLRQNQRILLAKSDVEGWGAFLKNPTNKNDYLGQFTGELISHLEAEKHGKMYDRANSSFLFNMNDQASVSIIVMYVLDAYRKGDKLKFDNHSEKPNCYARIMLVGGDHRVGIFAKERIKASEELFFDYCYSPEQAPAWY. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00679 360 SUPERFAMILY SET domain 213 353 IPR046341 -
Seca6g00679 360 Gene3D SET domain 178 352 IPR046341 -
Seca6g00679 360 Pfam SET domain 250 349 IPR001214 GO:0005515
Seca6g00679 360 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 1 80 IPR045318 GO:0006338|GO:0042054
Seca6g00679 360 SMART set_7 227 356 IPR001214 GO:0005515
Seca6g00679 360 CDD SET_EZH 227 351 - -
Seca6g00679 360 ProSiteProfiles SET domain profile. 227 350 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00679 Seca-Chr6 22649873 22652773 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00679 233 353 C2H2 Transcription Factor Family AT2G23740 25.385 8.45e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca6g00679 SET 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00679 - - twl:120000074 257.299