Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00678 ATGCTAGCACATCAATCGATTATTGGAAAAAAGCAAATATATTATGATAAAGATGATGGTGAGACACTCATATACTGTGATAGCGATAAGGAATCGACAAAGTTTACCGATGTTAAACGTGACTTTAGTGTGGCTGAAGATCAAATTTTGTGGATGGCATTTGAGGAACATGGCTTCACTGAGGAAGTGTTGAATATAGTTTCAAAGTTTGTCAATGGTACCGTTTTAGAAATTCAGGAGAGGTATAAATTTCTCAAGGAAAAGAATACGAGGAGTTTGGACCAACATTCTAAAGATTTTAAAGAACCTGGTTCTCTTATTGGCATGTCTTTGGATAAAAGCTTGAAGGATGCTTTGGCTACTTTTGATAACCTTTTCTGCCTGCAGTGCATTCAAATCTTTGATTGTCCTCTGCATGGTTGTTCACAACCTATATATCCTTGTGAAAAACAGAAAGTATGGTCTGAACCTGAAGGTGACAGGAAACCATGTTGTGATAATTGCTACCTTTGGAAACCTCTGGAAGCGCAAGTTGATGGGAAGCTAAGTTTCTCAAATTGGAAACCTCTGGAAAAAGATTTATATATGAAGGGAGTAGAAATATTTAGGAGGAACAGGACCGAGATATTGCATCAGGGTCATGGGTACGACAAAAAGCGCACAAAATTAGGAAGTTTAAATATTCATCCAAGTCTGCTGGCCTCCCATCTACATCGAAAGCAATTACTGCTGGGAAATGTGAAACTTACAAGCAATATACACCTTGTGTATGTCAGGAAATGTGTGGAAAGCAATGTCCTTGTCTTCATCATGGATCTTGCTGCGAAAAATATTGTGGGTGTTCAAAGCTCTGCCAAAATCGGTTTAGAGGATGTTATTGTGCTAAGAGTCAATGTAGAAGTCAACAATGTCCATGCTTTGCAGCAGAACGAGAATGTGACCCAGATTTGTGGCGGTGATTCATTAGGAGAGCCACCTCGCCATGGTGATGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAAAACCAAAGGATTCTATTAGCAAAGTCTGATGTTGAAGGATGGGGAGCCTTCTTAAAGAACCCAGCTAACAAAAATGATTACTTGGGAGAGTTCACGGGTGAACTGATCTCTCATTTAGAAGCAGAAAAGCGTGGGAAAATGTATGATCGTGCAAACTCCTCTTTCCTTTTTAACTTGAATGATCAGGCAAGTGTCTCTATAATTGTAATGTACGTTCTTGATGCTTATCGCAAGGGAGACAAGCTGAAATTTGCTAACCACTCAAAAAAACCTAACTGTTATGCAAGGATTATGCTTGTTGGAGGGGATCATCGAGTAGGGATATTTGCCAAGGAACGCATTGAAGCTGGTGAGGAGCTTTTCTTTGATTATTGCTATAGTCCAGAGCAAGCACCAGCATGGTATTAA 1434 0.3954 MLAHQSIIGKKQIYYDKDDGETLIYCDSDKESTKFTDVKRDFSVAEDQILWMAFEEHGFTEEVLNIVSKFVNGTVLEIQERYKFLKEKNTRSLDQHSKDFKEPGSLIGMSLDKSLKDALATFDNLFCLQCIQIFDCPLHGCSQPIYPCEKQKVWSEPEGDRKPCCDNCYLWKPLEAQVDGKLSFSNWKPLEKDLYMKGVEIFRRNRTEILHQGHGYDKKRTKLGSLNIHPSLLASHLHRKQLLLGNVKLTSNIHLVYVRKCVESNVLVFIMDLAAKNIVGVQSSAKIGLEDVIVLRVNVEVNNVHALQQNENVTQICGGDSLGEPPRHGDGQCGNMRLLLRQNQRILLAKSDVEGWGAFLKNPANKNDYLGEFTGELISHLEAEKRGKMYDRANSSFLFNLNDQASVSIIVMYVLDAYRKGDKLKFANHSKKPNCYARIMLVGGDHRVGIFAKERIEAGEELFFDYCYSPEQAPAWY. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00678 477 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 318 471 IPR045318 GO:0006338|GO:0042054
Seca6g00678 477 SUPERFAMILY SET domain 330 470 IPR046341 -
Seca6g00678 477 Gene3D SET domain 296 469 IPR046341 -
Seca6g00678 477 SMART set_7 344 473 IPR001214 GO:0005515
Seca6g00678 477 Pfam SET domain 355 466 IPR001214 GO:0005515
Seca6g00678 477 ProSiteProfiles SET domain profile. 344 467 IPR001214 GO:0005515
Seca6g00678 477 CDD SET_EZH 344 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00678 Seca-Chr6 22619061 22622699 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00678 333 470 C2H2 Transcription Factor Family AT2G23740 26.531 2.84e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca6g00678 SET 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00678 - K11430 twl:120000074 261.536