Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00677 ATGGGTACGCACAAAATTAGGAAGTTTAAATATTCATCCAAGTCTGCTGGCCTCCCATCTACATGGAAAGGAATTACTGCTGGGAAATGTGAAACTTACAAGCAGTATACACCTTGCGTATGTCAGGAAATGTGTGGGAAGCAATGTCCTTGTCTTCATCATGGATCTTGCTGTGAAAAATATTGTGGGTATTCAAAGCTCTGCCAAAATCAGTTTAGAGGATGTTATTGTGCTAAGAGTCAATGTAGAAGTCAACAATGTCCATGCTTTGCAGCAGAACGAGAATGTGACCCAAATGTATGTCGAAATTGTTGGGTTAGTTGTGGCGGTGGTTTGTTTGGAGGGCCACCTCGCCATGGTGATGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGAAAAACCAAAGGATTCTATTAGCAAAGTCTGATGTTGAAGGATGGGGAGCCTTCTTAAAGAACCCAGCTAACAAAAATGATTACTTGGGAGAGTTCACGGGTGAACTGATCTCTCATTTAGAAGCAGAAAAGCGTGGGAAAATGTATGATCGTGCAAACTCCTCTTTCCTTTTTAACTTGAATGATCAGTACGTTCTTGATGCTTATCGCAAGGGAGACAAGCTGAAATTTGCTAACCACTCAGAGAAACCTAACTGTTATGCAAGGATTATGCTTGTTGGAGGGGATCATCGAGTAGGGATATTTGCCAAGGAATGCATTGAATCTGGTGAGGAGCTTTTCTTTGATTATTGCTACAGTCCAGAGCAAGCACCAGCATGGTATTAA 783 0.4151 MGTHKIRKFKYSSKSAGLPSTWKGITAGKCETYKQYTPCVCQEMCGKQCPCLHHGSCCEKYCGYSKLCQNQFRGCYCAKSQCRSQQCPCFAAERECDPNVCRNCWVSCGGGLFGGPPRHGDGQCGNMRLLLRKNQRILLAKSDVEGWGAFLKNPANKNDYLGEFTGELISHLEAEKRGKMYDRANSSFLFNLNDQYVLDAYRKGDKLKFANHSEKPNCYARIMLVGGDHRVGIFAKECIESGEELFFDYCYSPEQAPAWY. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00677 260 ProSiteProfiles SET domain profile. 135 250 IPR001214 GO:0005515
Seca6g00677 260 Gene3D SET domain 36 252 IPR046341 -
Seca6g00677 260 ProSiteProfiles CXC domain profile. 13 121 IPR026489 -
Seca6g00677 260 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 5 255 IPR045318 GO:0006338|GO:0042054
Seca6g00677 260 SMART CXC_2 70 107 IPR033467 -
Seca6g00677 260 Pfam CXC domain 74 105 IPR041355 -
Seca6g00677 260 CDD SET_EZH 135 251 - -
Seca6g00677 260 Pfam SET domain 146 249 IPR001214 GO:0005515
Seca6g00677 260 SUPERFAMILY SET domain 38 253 IPR046341 -
Seca6g00677 260 SMART set_7 135 256 IPR001214 GO:0005515
Seca6g00677 260 FunFam Putative histone-lysine N-methyltransferase EZH2 36 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00677 Seca-Chr6 22594157 22595715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00677 136 253 C2H2 Transcription Factor Family AT2G23740 25.926 5.37e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca6g00677 SET 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00677 - K11430 twl:120000074 447.203