Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00676 ATGAAGGGAGTAGAAATATTTGGGAGGAACAGTTGCCTTATAGCACGAAACTTACTTTCTAGCTTGAAGACCTACATTGAAGTAGCTAGCTACATGTATGCCGAAGAAGTGTCAGTTCCTGATAGTTCAATCGTTAACAAAAGTGGACAAATTGATGCAGAGTTAGAACCATTTCTATTTTGCCAGGACCGAGAGATTGCATCAAGGTCATGGGTACGACAAAAAGCGCACAAAATTAGGAAGTTTAAATATTCATCCAAGTCTGCTAGCCTTCCATCTACATGGAAAGGAATTATTGCTGGGAAATGTGAAACTTACAAGCAGTATACACCTTGTGTATGTCAGGAAATGTGTGGGAAGCAATTTCCTTGTCTTCATCATGGATCTTGCTGTGAAAAATATTGTGGGTGTTCAAAGCTCTGCCAAAATCAGTTTAGAGGATGTTATTGTGCTAAGAGTCATTGTAGAAGTCAACAATGTCCATGCTTTGCAGAAAAACGAGAATGTGATCCAGATGTATGTCGAAATTGTTGGGTTAGTTGTGGTGGTGGTTCATTAGGAGAGCCACCTCGCGATGGTGATGGTCAATATGGAAATATGAGGCTTCTTTTAAGGCATAACCAAAGGATTCTATTAGCAAAGTCTGATGTTAAAGGATGGGGAGCCTTCTTAAAGAACCCAGCTAACAAAAATGATTACTTGGGAGAGTTCACGGGTGAACTGATCTCTCATTTAGAAGCAGGAAAGCGTGGGAAAATGTATGATCGTGCAAACTCCTCTTTCCTTTTTAACTTGAATGATCAGTACGTTCTTGATGCTTATCGGAAGGGAGACAAGCTGAAATTTTCTAACCACTCAGAAAAACCTAACTGTTATGCAAGGATTATGTTTGTTCGAGGGGATCATCGAGTAGGGATATTTGCCAAGGAACACATTGAAGCTGGTGAGGAGCTTTTCTTTTATTATTGCTACAGTCCAAAGCAAGCACCAGCATGGTATTAA 1002 0.4002 MKGVEIFGRNSCLIARNLLSSLKTYIEVASYMYAEEVSVPDSSIVNKSGQIDAELEPFLFCQDREIASRSWVRQKAHKIRKFKYSSKSASLPSTWKGIIAGKCETYKQYTPCVCQEMCGKQFPCLHHGSCCEKYCGCSKLCQNQFRGCYCAKSHCRSQQCPCFAEKRECDPDVCRNCWVSCGGGSLGEPPRDGDGQYGNMRLLLRHNQRILLAKSDVKGWGAFLKNPANKNDYLGEFTGELISHLEAGKRGKMYDRANSSFLFNLNDQYVLDAYRKGDKLKFSNHSEKPNCYARIMFVRGDHRVGIFAKEHIEAGEELFFYYCYSPKQAPAWY. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00676 333 ProSiteProfiles CXC domain profile. 86 194 IPR026489 -
Seca6g00676 333 SMART CXC_2 143 180 IPR033467 -
Seca6g00676 333 ProSiteProfiles SET domain profile. 208 323 IPR001214 GO:0005515
Seca6g00676 333 SMART set_7 208 329 IPR001214 GO:0005515
Seca6g00676 333 Gene3D SET domain 109 325 IPR046341 -
Seca6g00676 333 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 2 328 IPR045318 GO:0006338|GO:0042054
Seca6g00676 333 CDD SET_EZH 208 324 - -
Seca6g00676 333 Pfam SET domain 247 322 IPR001214 GO:0005515
Seca6g00676 333 SUPERFAMILY SET domain 110 326 IPR046341 -
Seca6g00676 333 FunFam Putative histone-lysine N-methyltransferase EZH2 109 325 - -
Seca6g00676 333 Pfam CXC domain 147 178 IPR041355 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00676 Seca-Chr6 22404047 22406133 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00676 209 326 C2H2 Transcription Factor Family AT2G23740 26.667 5.68e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca6g00676 SET 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00676 - K11430 gmx:100795451 504.597