Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00671 ATGGAGAGATCCTCTCTGTTTTTCATCATCTCTGTGTTCTGTCTCCTTCTATTTCAACCTGCTAGATCAGTAGATGATTCTGAAGCACTTCTGGCGCTGAAATCCTCCATTGATGTTCTCAACAAGCTTCCATGGCAAAGAGGAAGTGATGTATGCACATGGGTAGGAGTCAGAGATTGTTTCAAAGGAAGGGTTAGAAAGCTAGTTCTTGAATACTTGAACTTAACAGGAACTTTGGATTCAAAGATCTTGAACCGTTTGGATCAACTAAGAGTCCTCAGCTTCAAAGGAAACTCACTCTCTGGTCCAATCCCAAACCTCTCTGGCTTGATCAATCTCAAATCAATATTCCTCAACGACAACAAATTCTCCGGCGAGTTTCCCATCTCAATCTCTGACCTCCACCGTGTCAAGGTCATAGTTTTATCAGGAAACCAAATCTCCGGCGACATTCCGGCGACTCTGTTAAAGCTCCGGCGACTTTATGTACTCTATTTGGAAGACAACAAGTTCACAGGTTCCATCCCGGGGTTCAACCAAACCGGGTTAAAGTACTTGAATGTCTCTAACAACAAACTCTCCGGCGAGATCCCGGCGACATTGATCCGATTCAATGCGTCGTCGTTTTTGGGTAACCCGGGTCTCTGTGGTGACCAGATCCACAAGGCATGCAAAAGCAGCATTCTTTTCCCGCCGGCGATGAGTCCCAGTTTTCCGGCGAGACCAATTAGTACTTCTTCATCTAACAGCAAGAAACTAGTGAAGATAATTGGAGGGAGTGTTGGTGGGGTTGTGTTGTTGCTAATATGTTTGGTTCTTCTGTGGGTAATTTGCAAGAACCGTAGGGAGAAGGTGGGTTCTGGGACAAGGAGCAAGGGTGGTGCTGACGTGGCAGAAGGAGAAGGTGGTGGTGGTGGTGGAGGAGGAGCAGGTGGTGGTGGTGGTGGAGATGGTAGAGGGGGTAATAATGAGGGGAAACAAGGGGGTTTTGCATGGGAAGGTGAGGGTCTAGGGAAGTTGGTGTTCTGCGGAGCAGGGGATAGGGAGATGAGTTACAGTTTAGAGGATTTGCTTAAGGCTTCAGCAGAGACTTTGGGAAGGGGTATTATGGGAAGTACATATAAGGCAGTGATGGAATCAGGTTTCATAGTTACTGTGAAGAGGTTGAAAGATGCTAGGTACCCTGCTTTGGAGGAGTTTAGGGCACACATTGAAGTCCTTGGGAGGTTAAGACACCCTAATTTGGTCCCTCTAAGAGCTTACTTTCAGGCCAAAGAGGAACGTCTTCTTGTTTATGATTACTTCCCCAATGGCAGCCTCTTCTCTCTCATTCATGGATCAAAAACATCTGGTGGGGGGAAGCCTCTTCATTGGACATCCTGCCTTAAAATTGCTGAAGATCTAGCAACTGGCCTGCTCTACATCCACCAGAACCATGGCTTAACACATGGAAACCTGAAATCTTCCAATGTGTTACTTGGTTCTGACTTTGAGTCCTGTCTCACTGATTATGGTCTAACTGTGTTCCTTAATCCTGACTCAATGGATGAACCAAGTGCCACTTCATTTTTCTATAGAGCACCTGAATGCCGTAGCTTTCAAAGGGCACAAACTCAACCAGCTGATGTATACAGCTTTGGTGTCCTTCTCCTTGAGCTTTTGACAGGCAAAACACCCTTCCAAGACCTTGTTCAAGCACATGGTTCAGATATACCAAAGTGGGTTAGGTCAGTGCGTGAAGAAGAGACAGAGTCAGGGGATGATCCTGCCTCAGGGAATGAAGCATCTGAAGAGAAGCTTCAGGCTCTTTTGAACATTGCAATGGCATGTGTTTCACTAGTGCCAGAGAATAGGCCTACAATGAGAGAGGTTTTGAAGATGATAAGAGATGCAAGAGGGGAAGCTCAGAATTCATCTAATAGCAGTGATCATTCACCTGGTAGATGGTCAGACACTGTTCAAAGCTTTCCAAGGGAAGAACACCTCAGCATATGA 1995 0.4607 MERSSLFFIISVFCLLLFQPARSVDDSEALLALKSSIDVLNKLPWQRGSDVCTWVGVRDCFKGRVRKLVLEYLNLTGTLDSKILNRLDQLRVLSFKGNSLSGPIPNLSGLINLKSIFLNDNKFSGEFPISISDLHRVKVIVLSGNQISGDIPATLLKLRRLYVLYLEDNKFTGSIPGFNQTGLKYLNVSNNKLSGEIPATLIRFNASSFLGNPGLCGDQIHKACKSSILFPPAMSPSFPARPISTSSSNSKKLVKIIGGSVGGVVLLLICLVLLWVICKNRREKVGSGTRSKGGADVAEGEGGGGGGGGAGGGGGGDGRGGNNEGKQGGFAWEGEGLGKLVFCGAGDREMSYSLEDLLKASAETLGRGIMGSTYKAVMESGFIVTVKRLKDARYPALEEFRAHIEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSKTSGGGKPLHWTSCLKIAEDLATGLLYIHQNHGLTHGNLKSSNVLLGSDFESCLTDYGLTVFLNPDSMDEPSATSFFYRAPECRSFQRAQTQPADVYSFGVLLLELLTGKTPFQDLVQAHGSDIPKWVRSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLVPENRPTMREVLKMIRDARGEAQNSSNSSDHSPGRWSDTVQSFPREEHLSI. 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00671 664 MobiDBLite consensus disorder prediction 285 330 - -
Seca6g00671 664 SUPERFAMILY Protein kinase-like (PK-like) 363 636 IPR011009 -
Seca6g00671 664 Pfam Protein kinase domain 362 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00671 664 Gene3D Ribonuclease Inhibitor 180 227 IPR032675 -
Seca6g00671 664 Gene3D Phosphorylase Kinase; domain 1 344 434 - -
Seca6g00671 664 ProSiteProfiles Protein kinase domain profile. 359 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00671 664 Gene3D Ribonuclease Inhibitor 23 179 IPR032675 -
Seca6g00671 664 FunFam Nuclear pore complex protein NUP107 23 177 - -
Seca6g00671 664 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 636 IPR046959 -
Seca6g00671 664 Pfam Leucine rich repeat N-terminal domain 25 58 IPR013210 -
Seca6g00671 664 Gene3D Transferase(Phosphotransferase) domain 1 435 653 - -
Seca6g00671 664 SUPERFAMILY L domain-like 23 204 - -
Seca6g00671 664 MobiDBLite consensus disorder prediction 632 664 - -
Seca6g00671 664 MobiDBLite consensus disorder prediction 633 664 - -
Seca6g00671 664 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00671 Seca-Chr6 22057802 22063987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00671 4 664 Receptor kinase-like Gene Family AT1G60630 60.979 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca6g00671 Pkinase 7.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00671 - - lja:Lj3g3v3500180.1 1015.37