Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00667 ATGGCATCGGCCTTCGTCAAGCTTGATGATTCCCCAATGTTCCAGAAACAGTTATTTACTCTTGAAGAAACAGCTGATGAGTTAAAGGATCGGTGCCAGAAACTATACAAAGGGTGTAAGAAGTTTATGACAGCTTTGGGGGAAGGATATAATGGAGAAATTGCCTTTGCTGATTCGTTAGAAGTATTTGGTGGTGGCCAGGACGACCCTGTTAGTGTATCAATTGGAGGACCTGTCATATCTAGGTTTATTACTACACTGCGTGAGCTAGCTACTTTTAAAGAGCTTCTTCGCTCACAGGTAGAGCATGTGTTGATTGACCGGTTGACAGAGTTTATGAATGTTGATTTGCAAGATGCAAAGGAATCTCGTCGTCGTTTTGACAAATCTGTGCATTCTTATGATCAGTCACGAGAAAAGTTTGTGTCTTTGAAGAAGAATACGCCAGAAGACATTGTTGCTGAATTGGAAGAGGATCTACAAAATTCAAAGTCAGCATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCTCTCATGAATATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCAATAAGTGCAATAATGGATGCTCATTTGAGATACTTTAAACTGGGTTATGACTTGTTGAGCCAAATGGAGCCCTATATTCATCAGGTGCTAACATATGCACAACAATCTAAAGAACTGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATACAGAACACAGGCAGAGATGGAAAATATGCGAGCTTCTAGCAGCTATACAGGACCTGTGCCAGGTGCTGATGGCACCCATGTTGTAGGTTTGAACTCATATAAAAGCTTTGAAGCAGGAATGCAGTCTTCTGCAACCAAAGGGGAGGTTCAAACAGTTAAACAGGGATATCTGTTAAAACGATCGTCAACCATGCGAGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAGGGAATTTATTTTATTACAGAGTGAAGGGAGCCAAACCCATGGGCTCTCAGTCATATAATTATAGTCGTTCTTCTGAACAAAATAGTGGAATGTTTGGTAGATTCCGTTCAAGGCACAACAGGGGAGCATCACTAAATGAGGATATTTTGGGTTGTTGTACAGTTGATCTGTGCACATCCACTATAAAGATGGATGCGGAGGATACAGATCTGCGACTTTGCTTCCGAATAATTTCTCCCTCAAAAACATATACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCTATCACATCACTTTTTAATTCTCAGTTTCTTCAACAGCCTCAATATGGTAGAATGCATTCAGAAAATAAAAACTCAGCAAGTGGTGCTTCTTTGAGAAGTAAATCAGAGGATACCCATAAATCTTCGACGGATGAAATATATTCCAAAGTAGGTAGTGTCTCTAAGATTTTAAGGAGAATTCCTGGGAATGATAAGTGTGCTGAGTGCAATGCCCCTGAACCAGACTGGGCATCTCTAAACCTTGGCATATTGCTGTGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGAGTTCATATCTCAAAGGTGAGATCTATAACATTAGATGTTAGGGTTTGGGAACCTACTATTTTGGAGTTATTCAATAACTTAGGTAATGCTTATTGTAATTCTATCTGGGAGGGCTTGCTTCAACTTGATGATGAAAGGTAA 1716 0.3992 MASAFVKLDDSPMFQKQLFTLEETADELKDRCQKLYKGCKKFMTALGEGYNGEIAFADSLEVFGGGQDDPVSVSIGGPVISRFITTLRELATFKELLRSQVEHVLIDRLTEFMNVDLQDAKESRRRFDKSVHSYDQSREKFVSLKKNTPEDIVAELEEDLQNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAEMENMRASSSYTGPVPGADGTHVVGLNSYKSFEAGMQSSATKGEVQTVKQGYLLKRSSTMRGDWKRRFFVLDNQGNLFYYRVKGAKPMGSQSYNYSRSSEQNSGMFGRFRSRHNRGASLNEDILGCCTVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNSQFLQQPQYGRMHSENKNSASGASLRSKSEDTHKSSTDEIYSKVGSVSKILRRIPGNDKCAECNAPEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVRVWEPTILELFNNLGNAYCNSIWEGLLQLDDER. 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00667 571 Gene3D Arfaptin homology (AH) domain/BAR domain 7 254 IPR027267 -
Seca6g00667 571 ProSiteProfiles ARF GTPase-activating proteins domain profile. 479 571 IPR001164 GO:0005096
Seca6g00667 571 SMART arf_gap_3 479 571 IPR001164 GO:0005096
Seca6g00667 571 ProSiteProfiles PH domain profile. 296 430 IPR001849 -
Seca6g00667 571 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Seca6g00667 571 MobiDBLite consensus disorder prediction 444 460 - -
Seca6g00667 571 CDD ArfGap 483 565 - -
Seca6g00667 571 Pfam PH domain 298 429 IPR001849 -
Seca6g00667 571 CDD BAR_SFC_plant 16 217 IPR035670 -
Seca6g00667 571 Pfam Putative GTPase activating protein for Arf 482 566 IPR001164 GO:0005096
Seca6g00667 571 SUPERFAMILY PH domain-like 297 445 - -
Seca6g00667 571 CDD PH_ACAP 299 434 - -
Seca6g00667 571 SUPERFAMILY BAR/IMD domain-like 8 319 IPR027267 -
Seca6g00667 571 MobiDBLite consensus disorder prediction 444 472 - -
Seca6g00667 571 PRINTS HIV Rev interacting protein signature 510 527 IPR001164 GO:0005096
Seca6g00667 571 PRINTS HIV Rev interacting protein signature 533 554 IPR001164 GO:0005096
Seca6g00667 571 PRINTS HIV Rev interacting protein signature 491 510 IPR001164 GO:0005096
Seca6g00667 571 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Seca6g00667 571 Gene3D - 292 449 IPR011993 -
Seca6g00667 571 SUPERFAMILY ArfGap/RecO-like zinc finger 482 565 IPR037278 -
Seca6g00667 571 Coils Coil 229 249 - -
Seca6g00667 571 Gene3D Arf GTPase activating protein 460 570 IPR038508 -
Seca6g00667 571 PANTHER CENTAURIN/ARF 3 567 IPR045258 GO:0005096
Seca6g00667 571 SMART PH_update 297 432 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00667 Seca-Chr6 21891017 21910930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00667 464 537 C2H2 Transcription Factor Family AT3G07940 54.054 1.17e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00667 K12489 - gmx:100796740 1040.8