Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00663 ATGGCTCCCAAAAGAGGTGGAAAAGCTCCAGTTCCAGCTTCCAAGAAGAAGCCTGAGAAAGTTACGAACCCATTGTTCGAGAAGCGTCCGAAGCAGTTCGGAATCGGAGGTGCATTGCCTCCAAAGAGAGACCTGACCCGATTCGTGAAGTGGCCTCAGACTGTCCAGCTTCAGAGGAAGAAGAGGATTCTCAAGCAGAGGCTGAAGGTTCCCCCAGCTTTGAACCAGTTCACTAAGACCCTCGACAAAAACCTCGGTCAGAAAAAAAACTTACTGAATATTTGGATCTGTTTTAACTTTATTGAGTTTAGCATACTTTTTGTTGTGGTGTTGATTGTCATGATCATAGGTTCATCACATGCATTGGTTATTTGGTTCTTGTTGTTGAGCAAGTCATCGAGACTGCCAATTGCTTCGACAAGCTTGTTCAAGATACTTCTGAAGTACAGGCCTGAGGATAAAGCTGAAAAGAAGGAGCGACTTTTGAAAAGAGCTCAGGCAGAGGCTGAAGGCAAAACAGTTGAAGCCAAGAAGCCTATTGTTGTGAAGTATGGTCTCAATCATGTTACCTACCTTATTGAGCAGAATAAAGCACAGCTGGTTGTAATTGCTCATGATGTAGACCCAATTGAATTGGTTGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTTAAGGGCAAGGCACGCCTGGGATCGATTGTCCACAAGAAAACTGCATCTGTCTTGTGCTTGACCAGCGTTAAGAATGAAGACAAGTTGGAGTTTAGCAGAGTCCTAGAAGCTATCAAGGCTAACTTCAATGACAAGTATGACGAGTACAGAAAGAAGTGGGGTGGTGGAATCATGGGCTCCAAATCCCAAGCCAGAACCAAGGCAAAGGAAAGGCTTCTTGCCAAGGAAGCTGCTCAGAGGATGTCTTAG 939 0.4494 MAPKRGGKAPVPASKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPQTVQLQRKKRILKQRLKVPPALNQFTKTLDKNLGQKKNLLNIWICFNFIEFSILFVVVLIVMIIGSSHALVIWFLLLSKSSRLPIASTSLFKILLKYRPEDKAEKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQARTKAKERLLAKEAAQRMS. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00663 312 FunFam 60S ribosomal protein L7a 136 287 - -
Seca6g00663 312 Coils Coil 155 175 - -
Seca6g00663 312 Gene3D - 137 306 IPR029064 -
Seca6g00663 312 PRINTS Ribosomal protein L7A/RS6 family signature 201 214 IPR018492 -
Seca6g00663 312 PRINTS Ribosomal protein L7A/RS6 family signature 227 241 IPR018492 -
Seca6g00663 312 PRINTS Ribosomal protein L7A/RS6 family signature 182 196 IPR018492 -
Seca6g00663 312 PRINTS Ribosomal protein L7A/RS6 family signature 217 227 IPR018492 -
Seca6g00663 312 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 169 259 IPR004038 -
Seca6g00663 312 SUPERFAMILY L30e-like 142 283 IPR029064 -
Seca6g00663 312 PRINTS Ribosomal protein L7A family signature 67 86 IPR001921 -
Seca6g00663 312 PRINTS Ribosomal protein L7A family signature 30 47 IPR001921 -
Seca6g00663 312 PRINTS Ribosomal protein L7A family signature 47 64 IPR001921 -
Seca6g00663 312 MobiDBLite consensus disorder prediction 1 23 - -
Seca6g00663 312 Gene3D - 51 94 IPR029064 -
Seca6g00663 312 ProSitePatterns Ribosomal protein L7Ae signature. 220 237 IPR004037 GO:0042254|GO:1990904
Seca6g00663 312 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 43 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00663 Seca-Chr6 21356228 21358776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00663 1 312 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 70.833 1.48e-157 438