Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00662 ATGAGTTCTCGGACAGGCAAGGGGCCTGCTGTCAGAAGTTACCGCCGGAGGAAGACAGCTTGGGAATTTGACCTTAACCGCGTGCCTGGTGAGAATCGTGAGCAGGAGGGACCTTCAACTCAGGTGGGGCCTCAAGAAGTTCAAGTTAGCCAACAACCACAGGCTGTACAACCTCCAACGATTGATGTAGAGGCCATTGATGATGATGTTATTGAATCTAGCCCAAGGGCTTTTGCTGAGGCTAAAAACAATTCAAGAAGAAATCGTGTAAGGACTATAGTTGATGTGGATTTAGGTAACATGCTATTCTTTTCCTCCACTTTCGATTTTTTTTTCTCACAATGTTGTGCTGAACTGCTGATGACAAACATTGTGTTTCTTAAAGAAGACAACAATTGTCACCTGCTATTCATGATTATTGCAGAAGATCAGATTAGGGTAACCAACAATAATCGCAACAAACGCAGAAGAGAATCCCCAAACCGAACAATTATTAATTGTGATCTTTATATAAATTTGGAAGGCAGTAGCAGTTCTATGGGGGAAAATGTTAAAAAGCCACCTGAGCCTCCCAAGGAGCCTGTCTTCAGCTGTCCAATATGTATGGGCCCTTTGGTAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAGTTGCATCAAGGCTGCTATAAGTGCTCAGAGTAAATGTCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCATCAACTAATTGA 762 0.4226 MSSRTGKGPAVRSYRRRKTAWEFDLNRVPGENREQEGPSTQVGPQEVQVSQQPQAVQPPTIDVEAIDDDVIESSPRAFAEAKNNSRRNRVRTIVDVDLGNMLFFSSTFDFFFSQCCAELLMTNIVFLKEDNNCHLLFMIIAEDQIRVTNNNRNKRRRESPNRTIINCDLYINLEGSSSSMGENVKKPPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKSCIKAAISAQSKCPTCRKKITVKELIRVFLPSTN. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00662 253 ProSitePatterns Zinc finger RING-type signature. 213 222 IPR017907 -
Seca6g00662 253 PANTHER ELFLESS, ISOFORM B 1 253 - -
Seca6g00662 253 MobiDBLite consensus disorder prediction 25 57 - -
Seca6g00662 253 Pfam Zinc finger, C3HC4 type (RING finger) 198 235 - -
Seca6g00662 253 SMART ring_2 198 235 IPR001841 -
Seca6g00662 253 MobiDBLite consensus disorder prediction 33 57 - -
Seca6g00662 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 252 IPR013083 -
Seca6g00662 253 ProSiteProfiles Zinc finger RING-type profile. 198 236 IPR001841 -
Seca6g00662 253 SUPERFAMILY RING/U-box 193 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00662 Seca-Chr6 21336465 21341947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00662 12 252 C3H Transcription Factor Family AT5G48655 44.444 2.88e-44 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00662 K22651 - gmx:100792853 282.337