Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00660 ATGTTGTGTGTTGCTTGTGGGTGTCACCAAAACTTTCACCGCATACACATTGTTTACAACCCCATAGCCTTACCTCAAGTAACAGACAACAATAGCTCAAAGCCACCAATGAAGAAGCGGAGGACAAGGTTCACATCGGAGCAAAGGAATCAATTGATGACTTTTGCTAAGGGGTTTGGGTGGAAACCTCAAATGGCAAACAAGGAAGAAATCCAATGTTTCTGCTCAGAGATGGGAATCACTCACAAAATATTAATGGTTTGGCTCAACAACAACCGTCATCAAGCAACACACAAGAATTAA 303 0.4191 MLCVACGCHQNFHRIHIVYNPIALPQVTDNNSSKPPMKKRRTRFTSEQRNQLMTFAKGFGWKPQMANKEEIQCFCSEMGITHKILMVWLNNNRHQATHKN. 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00660 100 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 95 - -
Seca6g00660 100 Gene3D - 26 98 - -
Seca6g00660 100 NCBIfam homeobox domain, ZF-HD class 38 93 IPR006455 -
Seca6g00660 100 SUPERFAMILY Homeodomain-like 28 95 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00660 Seca-Chr6 21081213 21081569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00660 1 94 ZF-HD Transcription Factor Family AT5G65410 28.571 3.91e-16 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca6g00660 ZF-HD_dimer 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00660 - - gmx:102668663 120.938