Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00659 ATGTCTAGTATTGACGTAAATTTGTCTGGGATAGTGTTTGAGCAAAAGGTGGTCTACAAGGAGTGTAGGCACAACCTTGCAGCAAAACACGGTCTTGTTTTCCATGACGGATGCCTAGAGTTTGTCAAAGACACCACCAATAATGCTATGTTGTGTGTTGCTTGTGGGTGTCACCAAAACTTTCACCGCAGACACATTGTTTACGACCCCATAGCCTTACCTCAAGTAATAGACAACAATAGCTCAAAGTCACCAATGAAGAAGCGGAGGACAAGGTTCACATCGGAGCAAAGGAATCAATTGATGACTTTTGTTAAGGGGTTTGGGTGGAAACCTCATATGGCAAACAAGGAAGAAATCTAG 363 0.4298 MSSIDVNLSGIVFEQKVVYKECRHNLAAKHGLVFHDGCLEFVKDTTNNAMLCVACGCHQNFHRRHIVYDPIALPQVIDNNSSKSPMKKRRTRFTSEQRNQLMTFVKGFGWKPHMANKEEI. 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00659 120 Gene3D - 76 120 - -
Seca6g00659 120 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 19 65 IPR006456 -
Seca6g00659 120 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 65 IPR006456 -
Seca6g00659 120 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 118 - -
Seca6g00659 120 Pfam ZF-HD protein dimerisation region 17 66 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00659 Seca-Chr6 21033504 21033921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00659 18 120 ZF-HD Transcription Factor Family AT1G14687 30.345 6.16e-14 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca6g00659 ZF-HD_dimer 3.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00659 - - gmx:102668663 115.931