Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00657 ATGTCTAGTATTGACGTAAATTTGTCTGGGATAGTGTTTGAGCAAAAGGTGGTCTACAAGGAGGGTAGGCACAACCTTGCAGCAAAACACGATCTTGTTTTCCATGATGGATGCCTAGAGTTTGTCAAAGACACCGCCAATGATGCTATGTTGTGTGTTGCTTATGGGTATCACCAAAACTTTCACCGCAGACACATTGTTTACAACCCCATAGCCTTACCTCAAGTAACAGACAACAATAGCTCAAAGCTACCAATGAAGAAGCGGAGGACAAGGTTCACATCGGAGCAAAGGAATCAATTGATGACTTTTGCTAAGGGGTTTGGGTGGAAACCTCAAATGGCAAACAAGGAAGAAATCCAACGTTTCTGCTCAGAGATGGGAATCACTCACAAAATATTAATGGTTTGGCTCAACAACAACCGTCATCGAGCAACACACAAGAATTAA 450 0.4244 MSSIDVNLSGIVFEQKVVYKEGRHNLAAKHDLVFHDGCLEFVKDTANDAMLCVAYGYHQNFHRRHIVYNPIALPQVTDNNSSKLPMKKRRTRFTSEQRNQLMTFAKGFGWKPQMANKEEIQRFCSEMGITHKILMVWLNNNRHRATHKN. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00657 149 ProSiteProfiles 'Homeobox' domain profile. 84 148 IPR001356 GO:0003677
Seca6g00657 149 NCBIfam homeobox domain, ZF-HD class 87 142 IPR006455 -
Seca6g00657 149 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 144 - -
Seca6g00657 149 Gene3D - 75 147 - -
Seca6g00657 149 CDD homeodomain 87 144 IPR001356 GO:0003677
Seca6g00657 149 Pfam ZF-HD protein dimerisation region 17 66 IPR006456 -
Seca6g00657 149 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 65 IPR006456 -
Seca6g00657 149 SUPERFAMILY Homeodomain-like 77 145 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00657 Seca-Chr6 20933100 20933603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00657 11 143 ZF-HD Transcription Factor Family AT1G69600 28.796 2.85e-18 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca6g00657 ZF-HD_dimer 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00657 - - gmx:102668663 143.28