Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00647 ATGGCTCCCAAAAGAGGTGGAAAAGCTCCAGTTCCAGCTTCCAAGAAGAAGCCTGAGAAAGTTACGAACCCATTGTTCGAGAAGCGTCCGAAGCAGTTCGGAATCGGAGGTGCATTGCCTCCAAAGAGAGACCTGACCCGATTCGTGAAGTGGCCTAAGACTGTCCAGCTTCAGAGGAAGAAGAGGATTCTCAAGCAGAGGCTGAAGGTTCCCCCAGCTTTGAACCAGTTCACTAAGACCCTCGACAAAAACCTCGGTCAGAAAAAAAACTTACTGAATATTTGGATCTGTTTTAACTTTATTGAGAGTTTGCATACTTTTGTTGCGGTGTTGATTGTCATGATTGCATTGGTTATTTGGTTCTTGTTGTTGAATAAGTCTTTGAGACTACCAATTTCTTCAACAAGCTTGTTCAAGATACTTCTGAAGTACAGGCCCGAGGATAAAGCTGAGAAGAAGGAACGACTTTTGAAAAGAGCTCAGGCAGAGGCAGAAGGCAAAACAGTTGAAGCCAAGAAGCCTATTGTTGTGAAATATGGTCTCAATCACGTTACCTACCTTATTGAGCAGAATAAAGCACAGCTGGTTGTGATTGCTCATGATGTAGACCCAATTGAATTGGTTGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAGGCACGCCTGGGATCGATTGTGCACAAGAAAACTGCATCTGTTTTGTGCTTGACCAGTGTTAAGAATGAAGACAAATTGGAGTTTAGCAGAGTCTTAGAAGCTATTAAGGCTAACTTCAATGACAAGTATGACGAGTACAGAAAGAAGTGGGGTGGTGGAATCATGGGCTCCAAATCCCAAGCCAGAACCAAGGCAAAGGAAAGGCTTCTTGCCAAGGAAGCTGCTCAGAGGATGTCTTAG 924 0.4426 MAPKRGGKAPVPASKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQLQRKKRILKQRLKVPPALNQFTKTLDKNLGQKKNLLNIWICFNFIESLHTFVAVLIVMIALVIWFLLLNKSLRLPISSTSLFKILLKYRPEDKAEKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQARTKAKERLLAKEAAQRMS. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00647 307 Gene3D - 132 301 IPR029064 -
Seca6g00647 307 PRINTS Ribosomal protein L7A/RS6 family signature 222 236 IPR018492 -
Seca6g00647 307 PRINTS Ribosomal protein L7A/RS6 family signature 177 191 IPR018492 -
Seca6g00647 307 PRINTS Ribosomal protein L7A/RS6 family signature 212 222 IPR018492 -
Seca6g00647 307 PRINTS Ribosomal protein L7A/RS6 family signature 196 209 IPR018492 -
Seca6g00647 307 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 43 283 - -
Seca6g00647 307 PRINTS Ribosomal protein L7A family signature 30 47 IPR001921 -
Seca6g00647 307 PRINTS Ribosomal protein L7A family signature 67 86 IPR001921 -
Seca6g00647 307 PRINTS Ribosomal protein L7A family signature 47 64 IPR001921 -
Seca6g00647 307 SUPERFAMILY L30e-like 137 278 IPR029064 -
Seca6g00647 307 Gene3D - 51 94 IPR029064 -
Seca6g00647 307 MobiDBLite consensus disorder prediction 1 23 - -
Seca6g00647 307 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 164 254 IPR004038 -
Seca6g00647 307 Coils Coil 150 170 - -
Seca6g00647 307 FunFam 60S ribosomal protein L7a 124 282 - -
Seca6g00647 307 ProSitePatterns Ribosomal protein L7Ae signature. 215 232 IPR004037 GO:0042254|GO:1990904
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00647 Seca-Chr6 19634410 19636931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00647 1 307 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 72.313 1.15e-158 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00647 K02936 - gmx:100792324 462.996