Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00625 ATGTACTTTAAGAGAATACAGTGCAGAGATCGTAGATGGGCTTTATTATTGCAGCCATCCAAATACTTCTACAGGCCAAGATTCTCTGATCATCCATGCTCTCATTCTTTGTCCCCTGAGACCACTGTGAAAGAATATGCTTCACATGGCAGTATCATCAGAAGGCATTTTTTAGGTTCAGATTCATCTAGGCATGCTTTATCTAGAAATAGTTATACTGGTCTAGACAAAAGGTGTAGTTTAGGTCTTAAGAGTACTCAGTTACAAGCGTATAGTTCTGAAAGTGATGGAAGAAATGCGAGTGAGAATAAACATGTACATGTTAATGATGGGGCTAACTTTGACAAGGGGAAGAATCAACAAGAGAAGTCTCGGGAAGATGCTAAGCACTGTAATGTCCATACACGACTTGGAGAACAGGATCAAGAGGAGTGGCTTAATAATGAGAAGCTTGCCATAGAAAGTAAAAGGAGAGAATCACCTTTTTTGACAAGAAAGGATAAGTTTAAAAACGAGTTTTTGAGAAGAATTGTTCCTTGGGAGAAAATAAACATTTCCTGGGATACATTTCCTTATCACATTCATGAGAATACCAAAAATCTTCTGATGGAATGTGCTGCTTCCCATTTGAGACATAATGAGTTTGCTTCATCTTTTGGGACTCGCCTCACATCTTCAAGTGGAAGAATATTGCTTCAGAGCATTCCTGGCACTGAGCTCTATCGTGAAAGATTAGTTAGAGCTCTTGCACAAGATTTACAAGTTCCTTTATTGGTGCTTGATAGCAACATCCTTGCTCCTTATGATATTGATGATGATTTATCGTCAGACTACGAATCTGATGATGATAATGTAGAATCTGGGGAGGACGGTTCTCTGGAGTCAGAGAATGAAGACGATAATGATGCTAGTAATGAAGAGGAGTGGACTAGCAGTGCTGATGCGAAGTCCGATGCAAGTGATAACGAAGACGCACTAGCATCTGCTGAAGCAGCCCTTAAGAAGGTTAAAGCAGCTGTTCAGAAACTTGTCCCTTACAATGTTGAAGAATTTGAGAAGATAACATCTGGAGAATCTGAGAGTTCTGAGTCCTCCAAGTCTAATGATGCCAAGTCTTCTGATAAATCTGGATGTCAGCTAAGAAAAGGTGACCGTGTGAAGTACATTGGGCCATCTGTTCAAGTTAAAGCTGATGATAGGATCATACTGGGGAAGATAATGACATCTGATGGTCCAACTAATGCTTATACTATTATACATGGCAGGCCTTTAACTAATGGTCAGAGAGGAGAGGTATATGAGGTTAATGGAGATCTAGTTGCTGTCCTCTTGGATAACAATGAAGATAGGGCCAATGAGGTGGAGAACCTTAATAACAATCAAACAGAACCACCAATTTATTGGATACATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATAGCAGTGGAGGCTTTATGTGAGGTTTTGCATTCCAAACAACCTCTTATTGTCTATTTTCCTGACAGTTCACAGTGGTTGCATAGAGCAGTTCCTAAGTCAAACCGAATTGAGTTTTTTAATAAGGTTGAAGAGATGTTTGACAAGTTATCTGGCCCCATAGTTTTGATTTGTGGTCAAAACAAAGTTCAGTCAGGATCAAAGGAGAAAGAACAATTTACGATGATACTTCCGAACTTTGGACGTGTTGCTAAGCTGCCTCTCTCTCTGAAGCGTTTGACTGAGGGATATAAAGGGGGAAAGACATCAGAAGATGACGAAATTAACAAGCTTTTCTCTAATGTTTTGTCTATACAACCACCTAAGGATGAGAATGTACTGGGAACATTCAAGAAACAACTTGAGGATGACAGGAAAATTGTGATTTCACGTAGTAATTTGAATGAACTACGGAAGGTTCTTGAAGAACATCAGCTCTCATGCATGGACCTCTTGCACGTTAATACTGATGGCATCATTTTGACAAAGCAAAAAGCTGAAAAAGTGGTAGGCTGGGCGAAAAATCATTACTTGTCATCATGCCTGCTTCCTTCTATTAAAGGAGAAAGATTGTGCCTGCCTCGTGAAAGTCTTGAAATTGCAATCTCAAGGTTGAAGGGAATGGAAACAATGTCACGGAAACCTTCTCAAAGCCTCAAGAACCTCGCAAAGGATGAGTTTGAGAGCAATTTCATTTCAGCTGTAGTACCTCCTGGTGAAATTGGGGTGAAGTTTGATGACATAGGTGCTCTTGAAGATGTAAAGAAGGCACTTAATGAACTTGTTATTCTTCCAATGAGAAGGCCTGAGCTTTTCTCTCATGGAAACCTGTTGCGGCCCTGCAAAGGAATATTACTTTTTGGTCCTCCTGGAACTGGGAAAACCCTTCTGGCTAAGGCACTTGCAACAGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCGACTCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAGCTTGCTCCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTTGAACATGAGGCCACCAGAAGAATGAGGAATGAGTTCATGGCAGCGTGGGATGGATTAAGGTCGAAAGAAAACCAAAGAATCCTCATTCTTGGTGCAACAAACCGGCCATTCGACCTTGACGATGCTGTTATTCGTCGCTTACCAAGAAGGATATATGTTGATTTACCTGATGCTGAAAATCGGATGAAGATTTTAAGAATATTTCTTGCAAAAGAAAATTTGGATCCTGATTTTCAGTTTGATAAACTGGCTAACTTGACTGATGGATACTCTGGCAGTGATTTGAAGAACCTCTGTATTGCTGCAGCATATAGACCTGTTCAAGAGCTCTTAGAGGAAGAAAAGAAGGGAGGCAATGACGGTACTTCGGTATTAAGGCCTCTTAAGTTGGATGATTTTATTCAGTCAAAATCCAAGGTGGGTCCATCAGTTGCCTATGATGCAACAAGCATGAATGAGTTGAGGAAGTGGAATGAAATGTACGGAGAAGGCGGTAGTAGGACAAAATCACCATTTGGATTTGGGAGCTGA 3108 0.4051 MYFKRIQCRDRRWALLLQPSKYFYRPRFSDHPCSHSLSPETTVKEYASHGSIIRRHFLGSDSSRHALSRNSYTGLDKRCSLGLKSTQLQAYSSESDGRNASENKHVHVNDGANFDKGKNQQEKSREDAKHCNVHTRLGEQDQEEWLNNEKLAIESKRRESPFLTRKDKFKNEFLRRIVPWEKINISWDTFPYHIHENTKNLLMECAASHLRHNEFASSFGTRLTSSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDSNILAPYDIDDDLSSDYESDDDNVESGEDGSLESENEDDNDASNEEEWTSSADAKSDASDNEDALASAEAALKKVKAAVQKLVPYNVEEFEKITSGESESSESSKSNDAKSSDKSGCQLRKGDRVKYIGPSVQVKADDRIILGKIMTSDGPTNAYTIIHGRPLTNGQRGEVYEVNGDLVAVLLDNNEDRANEVENLNNNQTEPPIYWIHVKDIENDLDAQSQDCYIAVEALCEVLHSKQPLIVYFPDSSQWLHRAVPKSNRIEFFNKVEEMFDKLSGPIVLICGQNKVQSGSKEKEQFTMILPNFGRVAKLPLSLKRLTEGYKGGKTSEDDEINKLFSNVLSIQPPKDENVLGTFKKQLEDDRKIVISRSNLNELRKVLEEHQLSCMDLLHVNTDGIILTKQKAEKVVGWAKNHYLSSCLLPSIKGERLCLPRESLEIAISRLKGMETMSRKPSQSLKNLAKDEFESNFISAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAKENLDPDFQFDKLANLTDGYSGSDLKNLCIAAAYRPVQELLEEEKKGGNDGTSVLRPLKLDDFIQSKSKVGPSVAYDATSMNELRKWNEMYGEGGSRTKSPFGFGS. 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00625 1035 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 168 1028 - -
Seca6g00625 1035 MobiDBLite consensus disorder prediction 273 323 - -
Seca6g00625 1035 MobiDBLite consensus disorder prediction 90 129 - -
Seca6g00625 1035 MobiDBLite consensus disorder prediction 98 129 - -
Seca6g00625 1035 SMART AAA_5 779 916 IPR003593 GO:0016887
Seca6g00625 1035 ProSitePatterns AAA-protein family signature. 886 905 IPR003960 GO:0005524|GO:0016887
Seca6g00625 1035 MobiDBLite consensus disorder prediction 309 323 - -
Seca6g00625 1035 MobiDBLite consensus disorder prediction 273 307 - -
Seca6g00625 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 741 963 IPR027417 -
Seca6g00625 1035 MobiDBLite consensus disorder prediction 354 378 - -
Seca6g00625 1035 Pfam AAA+ lid domain 936 971 IPR041569 -
Seca6g00625 1035 Gene3D - 742 1017 IPR027417 -
Seca6g00625 1035 Coils Coil 440 460 - -
Seca6g00625 1035 Pfam ATPase family associated with various cellular activities (AAA) 783 913 IPR003959 GO:0005524|GO:0016887
Seca6g00625 1035 Gene3D - 915 999 - -
Seca6g00625 1035 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 741 917 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00625 Seca-Chr6 18876012 18908470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00625 777 978 Calmodulin-binding Proteins AT3G56690 35.577 8.08e-32 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00625 - - gmx:100802939 1689.47