Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00623 ATGGCTATGGTTTCCGTCGGTTTCCATAAGGTGGCAAACCTGTGTGGGAGAAGGGAGAGTTGGAGGTTGCGTCTGAAACTAATTAGGCTTTGGAAGATGTCTGCAGTGGCCACCCCAGATGATCCCTTCGCCCTGCATATGTTATTTGTGGATCAGGAGGGTCTCTGCATCGAGGCTGTTATCCAGAAACACTTGATGCACCGATTCAGTAATTCCGTCATAGAAGGGGAGGTTTATAATGTTAGTAATTTCTCTGTTACTCGGAACAGTGGGAAATTCAGAGCAACACACCATGACTACAAGCTTACCTTTAATGCAAACACAAGGATTGTTCTCTGTCCTGTCGTCACTATTCCGGACCATGGTCTGACTCTGGTCAAGACATCTGATATCATGAAGACTAAAGGGTCTTCTCTGTACCTAATCGATTTCATGGGAATAGTTACGGGTATCTCCGAAGAGTTAAACTTAAGCAAGGAAGGGAGACAAACACGCTTGATGCTGATCGATATGGTTGACGAAATGGGGAAGATCAGATGTGCTATATTTGGACAGCTCATTGATGTTGTTAAGGGGTATCTAACTCTTCCACGGTGTGGTTTGCCTGTTCTCATTATTCAGCTTGCCCGTGTTAATCTATACAGGGGTATTTTCCTTTTATGTGGACTTCTCTGTTTTCCTAAACCCATCACGACATGTTCACAAAACACTTTCATTGTCTGTTTTTGTTTTGCAGGGGAAGTTGGCATTCAAAACCTTTTGAATGCGTCCAAGCTGTTGTGGAATCCTGAAATTCCGGAGGCCGTGGAGTTCAAAAATGGGCTTGCTGTTCATGAGATTGAAACGGACGTTGCAATCTCCCTGATATCAGATAATAGTCGTCCTATTTCTATACGGGAGCAATTCCTTGAACTGAACCCCAGGAAGCGTTTGGGGGAGCTGAACAACCTTCTGGAGGATGGAACTTGTATAGTCCATGGCACAATAACAGAGGTATTCCAGGAAGACGATTGGTGGTACATTGCATGCTCTTGCATGAGGGCTGTTGATTTCAGTCAAGGGTTCCCATTTTGCGATCGTTGCAAGCGTGAGGTGTATGACATGTCACCAAGGTACAAGATAAAGGTTCTTGTGTGTGATGAATCTGAATCAACTGAGTTGATTATGTTTGATGCGGAGTGTTATTCGCTAATTAACATACCTTGTAAGGGGCTCCTCTCGGATTCTAAGGGTAAGCAGTGTGACGGTTATCCAAATGAAATATTAGATTTTGTTGGTCAAGAGCTGCTTTTCCGAGTTGAGCTCAATGCAGATAAATCTTCCAGCTTCGACGACGAGTCCATTAAAGTTCGGAAGATCTGTTTCGAACCATGCATTATCAAAGAATATAAGGGACTGATTGATGATGAGACCCCTTTGAAGGTTTCCGCTCTCCCAAATTTAACATCTGACCTTATTTTGATTTTCTACTTTTACACTTATACAAGATTCAATCAATTGCCTTACTTAACTACTTATTTTTTTCAGCTCAAGTTCGTTCCTGCGTTCTCCAAATTCGAAAACAATGGATGA 1572 0.4275 MAMVSVGFHKVANLCGRRESWRLRLKLIRLWKMSAVATPDDPFALHMLFVDQEGLCIEAVIQKHLMHRFSNSVIEGEVYNVSNFSVTRNSGKFRATHHDYKLTFNANTRIVLCPVVTIPDHGLTLVKTSDIMKTKGSSLYLIDFMGIVTGISEELNLSKEGRQTRLMLIDMVDEMGKIRCAIFGQLIDVVKGYLTLPRCGLPVLIIQLARVNLYRGIFLLCGLLCFPKPITTCSQNTFIVCFCFAGEVGIQNLLNASKLLWNPEIPEAVEFKNGLAVHEIETDVAISLISDNSRPISIREQFLELNPRKRLGELNNLLEDGTCIVHGTITEVFQEDDWWYIACSCMRAVDFSQGFPFCDRCKREVYDMSPRYKIKVLVCDESESTELIMFDAECYSLINIPCKGLLSDSKGKQCDGYPNEILDFVGQELLFRVELNADKSSSFDDESIKVRKICFEPCIIKEYKGLIDDETPLKVSALPNLTSDLILIFYFYTYTRFNQLPYLTTYFFQLKFVPAFSKFENNG. 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00623 523 SUPERFAMILY Nucleic acid-binding proteins 7 114 IPR012340 -
Seca6g00623 523 Gene3D - 117 282 IPR012340 -
Seca6g00623 523 Pfam Domain of unknown function DUF223 47 120 IPR003871 -
Seca6g00623 523 Pfam Replication factor-A C terminal domain 325 445 IPR013955 -
Seca6g00623 523 SUPERFAMILY Nucleic acid-binding proteins 125 219 IPR012340 -
Seca6g00623 523 SUPERFAMILY Nucleic acid-binding proteins 319 454 IPR012340 -
Seca6g00623 523 Gene3D - 300 465 IPR012340 -
Seca6g00623 523 CDD RPA1_DBD_A_like 22 110 - -
Seca6g00623 523 Gene3D - 8 114 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00623 Seca-Chr6 18793806 18797108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00623 1 454 Core DNA Replication Machinery Family AT5G08020 20.208 4.50e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00623 - - lja:Lj6g3v0884310.1 323.168