Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00618 ATGGGAAAGTCAAGCAAGAAATCAGCCACCAAAGTTGACGCAGCTACCGCTGTGGCTCCGACATCGAAATCTGCCAAAAAGGGCAAGAGGCAGGCTGATGAGCTTGAGAAGCAATTGAGTGCAAAGAAGCAGAAGGTAGAAGAGGTTGCTCAGAAGCAAAAGAAGGAAGCAAAGAAACCAGCAGCAAAAGTTGCTGTTCCTTCAAAAAAGGCACCTGCTAAAAATGTCGCTCTTATCCAAGCAAAGAAAGGCAAGCCAGCTCCCAGCTCCAGTTCTTCTGAATCTTCTGAAGATGACTCCTCTGATGAGGATGAAGTGAATGCAAAGAAACAAAAGAAAGAAGTGGTTGCTGAGAAGCAAAAGAAGGAAGCAAAGGTGCAAAAGAATAAGAAGGAAAGTAGTTCAGATGATTCTTCAGAATCTGAAGATGAGAAACCTGCATCAAAAGTTTCTGTTCCATCAAAAAATCAACCTGCTAAAAATGGCACTCTTAGTACTCCAGCAAAGAACGCAAAGCCAGCTAGCAGTTCCAGTTCTTCTGAATCCTCTGATGATGACTCCTCTGACGAAAATGAAGCTCCAAAACCGAAGGTGGTACCTTCTGCAGCAGGTAAGAATGGACCTGCTTCTACAAAGAAAATTCAGCAAAGTGAAACCTCAGAGTCTGATTCTGATAGCAGCTCTGATGAGGACAATGTAACTAAACCATCTAAGAAGCCTGCTGCTGCTGGTCTTGGTAAGAATGTGCCTGCCAAGAAGGTTGATTCAGACTCATCCTCTGATAGTAGTTCTGATGAAGAGGATGATAATAAGAAGAAACCAGCTGCTGCTGTGTCCAAAAAGCTGCCTGCATCTGCAGTTGCTCCAAGTAAGAAAGTTGAGACAAGTGAAAGCTCAGATGATGAATCAAGTGACAGCTCTGATGATGACAACGATACAAAGCCTACTGTAACAGCTGTGTCCAAGCCTTCTGCTGCTGCTAAAAAGAATGTTGACAGCTCAGATTCTGATGATGATAGCAGCTCTGATGAAGACAATAAACCAACAAAAGTTTCTAATGGTAACAAGAAACAAGCAACAGTTGCGAAGGCAGCTAAAAAGGAGTCTAGCTCAGAGAGTGATTCATCAGATGATGAGGATAAGATGGATGTCGACGATGATGATAGTTCTGATGAAAGTGATGAAGAGCCACCGAAGAAAAAGCATCCCGTGAAAGACTCAGAGGAAAGCAGTGATAGTTCTGACGACAGTGACGAGGAAGATGAGAAACCCTCTAAAACTCCTCAGAAAAAAGTTAAGGATGTGGAGATGGTTGATGCTGCCTCGGCTGGAAAGAATGCTCCTAAAACCCCAGTTACACCAAAAGAACAAAATGGCACTTCAAAGACATTATTTGTTGGAAACTTGTCATATAGTGTGCAACGAGAAGATGTGGAAAATTTCTTCAAAGATTGTGGTGAGATTGTTGATGTCCGCCTAGCTACAGATGATGATGGGAGGTTTAAAGGCTTTGGACATGTAGAGTTTGCAACAGCAGAGGCAGCCCAAAATGCGCTGGAGTTAAATGGGCAAGAATTGTTGCAACGTGCTGTCCGGCTTGATTTAGCTCGGGAAAGGGGTGCTTATACCCCCACAAGCAACAACAACTGGAACAATTCATTCCAGAAGGGTGGAAAAGGCCAGTCTCAAACAGTATTTGTGAAAGGTTTTGATAGATCTCTTGGGGAAGATGAGATAAAATCTAGTCTGCAGGAGCATTTCGGTTCTTGTGGGGAAATTACAAGGATATCAGTTCCGAAAGATTATGATTCTGGTTCTGTTAAGGGGTTTGCTTACTTGGACTTCAGTGATGGTGATAGCTTGAATAAAGCACTTGAACTTCATGAAAGTGAACTTGGTGGTTATACCTTGTCAGTTGATGAAGCAAAACCTAGAGGTGATAATCAAGGTTCAGGTGGTAGAGGTGCAGGAGGAAGGAGTGGTGGCGGTAGATTTGGTGGTGGAAGGAGTGGTGGTGGTAGAGGTCAATTTGGTGGAAGGGGTGGTGGTGGCAGAGGTGGTAGAGGAAGAGGTGGTGGTAGGGGTCGAGGAACACCTAACAGACCAAGTCTTGCTGCGGAAGGCACAGGGACAAAGACTACTTTTGCCGATGACGACTAG 2160 0.4412 MGKSSKKSATKVDAATAVAPTSKSAKKGKRQADELEKQLSAKKQKVEEVAQKQKKEAKKPAAKVAVPSKKAPAKNVALIQAKKGKPAPSSSSSESSEDDSSDEDEVNAKKQKKEVVAEKQKKEAKVQKNKKESSSDDSSESEDEKPASKVSVPSKNQPAKNGTLSTPAKNAKPASSSSSSESSDDDSSDENEAPKPKVVPSAAGKNGPASTKKIQQSETSESDSDSSSDEDNVTKPSKKPAAAGLGKNVPAKKVDSDSSSDSSSDEEDDNKKKPAAAVSKKLPASAVAPSKKVETSESSDDESSDSSDDDNDTKPTVTAVSKPSAAAKKNVDSSDSDDDSSSDEDNKPTKVSNGNKKQATVAKAAKKESSSESDSSDDEDKMDVDDDDSSDESDEEPPKKKHPVKDSEESSDSSDDSDEEDEKPSKTPQKKVKDVEMVDAASAGKNAPKTPVTPKEQNGTSKTLFVGNLSYSVQREDVENFFKDCGEIVDVRLATDDDGRFKGFGHVEFATAEAAQNALELNGQELLQRAVRLDLARERGAYTPTSNNNWNNSFQKGGKGQSQTVFVKGFDRSLGEDEIKSSLQEHFGSCGEITRISVPKDYDSGSVKGFAYLDFSDGDSLNKALELHESELGGYTLSVDEAKPRGDNQGSGGRGAGGRSGGGRFGGGRSGGGRGQFGGRGGGGRGGRGRGGGRGRGTPNRPSLAAEGTGTKTTFADDD. 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00618 719 SUPERFAMILY RNA-binding domain, RBD 452 556 IPR035979 GO:0003676
Seca6g00618 719 SUPERFAMILY RNA-binding domain, RBD 555 674 IPR035979 GO:0003676
Seca6g00618 719 MobiDBLite consensus disorder prediction 1 17 - -
Seca6g00618 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 563 644 IPR000504 GO:0003723
Seca6g00618 719 MobiDBLite consensus disorder prediction 636 719 - -
Seca6g00618 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 464 531 IPR000504 GO:0003723
Seca6g00618 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 565 637 IPR000504 GO:0003723
Seca6g00618 719 Coils Coil 112 132 - -
Seca6g00618 719 FunFam Nucleolin 2 436 546 - -
Seca6g00618 719 MobiDBLite consensus disorder prediction 1 460 - -
Seca6g00618 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 462 538 IPR000504 GO:0003723
Seca6g00618 719 CDD RRM2_NUCLs 564 642 IPR034350 -
Seca6g00618 719 MobiDBLite consensus disorder prediction 375 393 - -
Seca6g00618 719 MobiDBLite consensus disorder prediction 420 438 - -
Seca6g00618 719 SMART rrm1_1 463 534 IPR000504 GO:0003723
Seca6g00618 719 SMART rrm1_1 564 640 IPR000504 GO:0003723
Seca6g00618 719 MobiDBLite consensus disorder prediction 208 222 - -
Seca6g00618 719 Gene3D - 452 559 IPR012677 -
Seca6g00618 719 Gene3D - 560 676 IPR012677 -
Seca6g00618 719 MobiDBLite consensus disorder prediction 150 182 - -
Seca6g00618 719 MobiDBLite consensus disorder prediction 103 149 - -
Seca6g00618 719 Coils Coil 25 56 - -
Seca6g00618 719 FunFam Nucleolin 2 548 699 - -
Seca6g00618 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 109 608 - -
Seca6g00618 719 CDD RRM1_NUCLs 463 539 IPR034349 -
Seca6g00618 719 MobiDBLite consensus disorder prediction 26 63 - -
Seca6g00618 719 MobiDBLite consensus disorder prediction 394 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00618 Seca-Chr6 18763376 18770089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00618 464 626 Eukaryotic Initiation Factors Gene Family AT4G34110 31.707 3.92e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00618 K11294 - gmx:100786132 568.155