Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00608 ATGTCTGAAAACAAGTGTAGATATGACGTTTTCCTAAGTTTTAGGGGTGAAGACACGCGTCACACTTTCACTGGTCATCTCTACGATGCTTTGTGTCGAAAGGGAATCAACACCTTCATCGACGATGAGCAACTCAGGGCTGGAGATCAAATTGCGCCTGCTTTACTTCAAGCCATTCAAGAATCCAAGATTTCAATTGTCATTTTCTCGGGAAATTATGCAAATTCCACGTGGTGTCTTAACGAACTTGTTAAGATCATGGAGTGTAAGGAGGAGAAAAATCAACTCGTTTGGCCAATCTTCTACAAAGTGGAACCCTCAGATGTGCGGCATCAGAGGAAGAGTATCGGAGAAGCAATGAAGCTTCATGAAGATAGGTTCGGAAAAAACTCAGAGAAAGTGCAAAAATGGAGGACAACCTTGTTTGACCTATCCAACTTGAAAGGATATCATTTGAAAGACGGGTATGAGTTCAAGTTTATTCAAGAGCTTGTAAGCAAGGTCTTAGTTAAAGTATCACCAAAAGATTTAGATACCGGTGAGAAACCCATAGTTGGACTAGAGTCTCGTGTTGAAGAATTGAATTCAATTCTAGAAATTGAGTCTCATGATGCCACTTGCTTTTTGGGGATTTATGGAGCTGGTGGAATTGGGAAAACCACACTTGTCAAAGCTTTGTATAACTCCATTTACAACCAGTTTGAAGGTGCATGTTTTCTTTTCAATGTCAGAGAAACTTCAGGTCAATTTGAGGGCCAAAAACGTCTCCAACAAACGCTTCTATCAGAAATGCTTGAGGAGGGAAAAATCCACTTGGAATCGGAGAATGAAGGAATCAGAACAATAAAAAGAAGACTTGGCCGAAACAGAGTTCTTATAGTTCTCGATGATGTTGATGACATCAAACAGTTGGAAAATTTGGCAGGGGGATGTCATTGGTTTGGTTCTGGGAGCAGGATCATTATAACTACGAGAGATAAAAATTTGCTAGATGTTCATGAGGTTGAAAAGAGATATGAAATGAAGATGCTAAATGATCATGAATCTCTCCAGCTCTTTTGTCAGAATGCCTTCAGAATGAGCCATCCTAAACCAAACTATGAAGGCCTTTCCTTTCGTGCAATGCGTTATGCCAAAGGCCTTCCTTTAGCTTTAAAATTGATAGGCTCTAATTTGTTTGGTAAAGAATTGGAACAATGGAGGTCTGCTTTGGACAAATATGAGAAGAATCCACATAGAGATATTCAAAGTATTCTTAGAATAAGCTTTGATAGTTTGGAACCCAATGAAAAAGACATTTTCCTCGACGTTGCATGCTTCTTCAAAGGGAAGAGATTGGAATATGTAAAAAGTATACTAGATGCCTGTGAGTTCTATCCAGAAATTGGTATTAAAACACTGGTTGATAAATCTCTTGTAACTGTTGAACATGGTTGTTTGAGGATGCATGACCTGATTCAAGACATGGGTAGAGAGATTGTAAAGCAGGAAGCGCCAGGAGAAGTTGGTAAACGCAGCAGATTATGGCTTTATGAAGATGTTCTCCAAGTACTAACTCAAAATACAGGAAGTAAGGAAATTAAAGGAATAATGTTTGATCCCCCTAAAGTAGAAAGGATTCGTTGGATTCATCATACTACATTTAGGAAGATGGAGAATCTTAGAATTCTCATTATTCGAAACACAATCTTTTCCTCTGGGCCAAGTTATTTGTCCAATCAATTAAGGGTGCTTGAATGGAGCCATTACCCTTCACAGACTTTACCAAGAGGATTTTCTCCCGAGAAAATTGTGGTGTTCAATTTACCTAGGAGTTCTTTCAAACTGAAAATGCCATTCCAGAAATTTGAGCATTTGACTTACATGAATATCTCCTCTAATTCTGTCACTCAATTTCCTAATGTCTCCGGAGCCAAAAATCTGAGAGAATTGAGGCTTGACAAATGCCTGAAACTGGTTACTGTTGATGGATCAGTTGGATTTCTTCCAAACCTTGTTTACTTAAGGGCTTCAGAATGTCCTCAGCTCAGACAATTTCTGCCAAGAATCTGTTTGCCATCTCTTGAATACCTTTCCTTTAATTTCTGCAGAGGACTCACACACTTCCCAGACATTGTGGGAAAAATGGACAAGCCATTAAAGGTTAGTATGATTGATACTGCTATCACAGAGTTTCCAGAATCCATTGACAAACTCACTGGGCTTAACTATCTTGAGATGACAGTATGTAAGGAACTCCAAGATCTACCAAGTAGCTTATTTATATTGCCAAATTTTGTCACATTAAAAATTGGTGGATGTTCTCAACTTCCTGAATCATTTAGAAAGTTCAAAGAAAGCCACTTAGCAGCACAGTGCCGCCCAAATTTAAGGACACTGCATTTCGGCTATGCTGATCTATTAGAGGAAGATATTGACGCAATTATTCACATTTTTCCAAACTTGGAAAACTTGAATGTATCGGGTAACAATTTTGTATCCCTCCCAGCTCACATTAAAGGATCTGTTTACCTGACAAGTCTTGATGTCAGTGGATGCAAGTTGCTTAAGGAAATTCCTGAATTGCCGTCAAGTGTTCATAAAGTAGATGCAAGAAAGTGCGATTCCATAAGTCAGAACACGTCAAGGATGTTATGGTCTCAGGTGCGTAAAGAGATTAATAGGCTAGAAGTTAAAATGCCCTTTATTCCATTTCATGAAATAGATGAAATAGAAGAAATGGTAAAACAAGAAGCTCTTGAAAAAATTGAGGAAATTACTGAGGCTTTTGAAGAATATATAAAAAAACAAGAAGCTCTTGAAAAAATTGAGGAAACTACTGAGGCTTTTGAAGAAATAGAAAAACTCATTGTGATGCCCACATGGTTCGACCATAGTAACAAAAGAGGGATTCCGGTTTTCAGGGCTCGTGGGAAGTTCCCGGTTGTTGTTTTAGCATTTGTGTTCGGGAAAGTGAATGACATGGCCATTACCAGTTCTTTTAGAGATCACATGCAAGTTGGTCTACACCTGTTCATTGAGGGCCTACATGTACATAGCAGTCAGTGCCGTAAATTCATCCTTGCAAAGGGTCATGTGTTGTTGTGTGACCTACGAGTTTTGTTCAGCGAGGAAGAGTGGGAAGGGCTTCATGCACGTGTTGGGGATGATTGGAAGACCGTGCAGGTCGATTGTGAAACAGATTTGAGCCTATTTTACTGGGGAGTTTATGTGTACAAGCAAGAGACAAACATGGAAGATATCGAGTTTGACGTTCAAGATCCCAGTTCCTCGGGAATTAGCAGGCCGTGGTCTTTGGTTTCGATGAATCAAGAGGACAAGGTGAGGAATATGCTAGCATGTTGGGATCCAATGCCAAAAATGTACGAGAAGATGTTGAGGGATGGTAGTTACTACAATATGAGTGCACTAGAAATGGCATCCAGGTGGAGACTGTCGAGGAGGGTTATGGCTCTAAGGGAGGGGAAAGGTGCTTCTGGGTCAGAGCTAGAAGACGAGGATGAGGAGGAGGACGATTTTATGCTTCAAGTACATTCAAGGCTCGTCTCAGGTGAGGGTGACGAAGAGATCATGGTTTCTTTAGGTTTCACCTGGTACCCAATAATAACAAAAATACTAAAATCTGTCGTAAATGTATGCCTTCCCTGCTTCCTCTGCTGCTGGTTCCTCTGCTGCGACCACTAA 3684 0.4004 MSENKCRYDVFLSFRGEDTRHTFTGHLYDALCRKGINTFIDDEQLRAGDQIAPALLQAIQESKISIVIFSGNYANSTWCLNELVKIMECKEEKNQLVWPIFYKVEPSDVRHQRKSIGEAMKLHEDRFGKNSEKVQKWRTTLFDLSNLKGYHLKDGYEFKFIQELVSKVLVKVSPKDLDTGEKPIVGLESRVEELNSILEIESHDATCFLGIYGAGGIGKTTLVKALYNSIYNQFEGACFLFNVRETSGQFEGQKRLQQTLLSEMLEEGKIHLESENEGIRTIKRRLGRNRVLIVLDDVDDIKQLENLAGGCHWFGSGSRIIITTRDKNLLDVHEVEKRYEMKMLNDHESLQLFCQNAFRMSHPKPNYEGLSFRAMRYAKGLPLALKLIGSNLFGKELEQWRSALDKYEKNPHRDIQSILRISFDSLEPNEKDIFLDVACFFKGKRLEYVKSILDACEFYPEIGIKTLVDKSLVTVEHGCLRMHDLIQDMGREIVKQEAPGEVGKRSRLWLYEDVLQVLTQNTGSKEIKGIMFDPPKVERIRWIHHTTFRKMENLRILIIRNTIFSSGPSYLSNQLRVLEWSHYPSQTLPRGFSPEKIVVFNLPRSSFKLKMPFQKFEHLTYMNISSNSVTQFPNVSGAKNLRELRLDKCLKLVTVDGSVGFLPNLVYLRASECPQLRQFLPRICLPSLEYLSFNFCRGLTHFPDIVGKMDKPLKVSMIDTAITEFPESIDKLTGLNYLEMTVCKELQDLPSSLFILPNFVTLKIGGCSQLPESFRKFKESHLAAQCRPNLRTLHFGYADLLEEDIDAIIHIFPNLENLNVSGNNFVSLPAHIKGSVYLTSLDVSGCKLLKEIPELPSSVHKVDARKCDSISQNTSRMLWSQVRKEINRLEVKMPFIPFHEIDEIEEMVKQEALEKIEEITEAFEEYIKKQEALEKIEETTEAFEEIEKLIVMPTWFDHSNKRGIPVFRARGKFPVVVLAFVFGKVNDMAITSSFRDHMQVGLHLFIEGLHVHSSQCRKFILAKGHVLLCDLRVLFSEEEWEGLHARVGDDWKTVQVDCETDLSLFYWGVYVYKQETNMEDIEFDVQDPSSSGISRPWSLVSMNQEDKVRNMLACWDPMPKMYEKMLRDGSYYNMSALEMASRWRLSRRVMALREGKGASGSELEDEDEEEDDFMLQVHSRLVSGEGDEEIMVSLGFTWYPIITKILKSVVNVCLPCFLCCWFLCCDH. 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00608 1227 Pfam NB-ARC domain 189 424 IPR002182 GO:0043531
Seca6g00608 1227 ProSiteProfiles TIR domain profile. 6 172 IPR000157 GO:0007165
Seca6g00608 1227 Gene3D - 343 427 IPR042197 -
Seca6g00608 1227 Gene3D - 5 174 IPR035897 -
Seca6g00608 1227 SMART till_3 7 147 IPR000157 GO:0007165
Seca6g00608 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 436 IPR027417 -
Seca6g00608 1227 PRINTS Disease resistance protein signature 285 299 - -
Seca6g00608 1227 PRINTS Disease resistance protein signature 730 746 - -
Seca6g00608 1227 PRINTS Disease resistance protein signature 378 392 - -
Seca6g00608 1227 PRINTS Disease resistance protein signature 208 223 - -
Seca6g00608 1227 Gene3D - 175 338 IPR027417 -
Seca6g00608 1227 Pfam TIR domain 8 174 IPR000157 GO:0007165
Seca6g00608 1227 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 150 IPR035897 -
Seca6g00608 1227 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 767 IPR044974 GO:0006952
Seca6g00608 1227 Coils Coil 909 949 - -
Seca6g00608 1227 SUPERFAMILY L domain-like 539 871 - -
Seca6g00608 1227 Gene3D Ribonuclease Inhibitor 722 890 IPR032675 -
Seca6g00608 1227 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 173 - -
Seca6g00608 1227 SUPERFAMILY "Winged helix" DNA-binding domain 414 518 IPR036390 -
Seca6g00608 1227 Gene3D Ribonuclease Inhibitor 538 720 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00608 Seca-Chr6 18348233 18353052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00608 8 778 WRKY Transcription Factor Family AT4G12020 30.818 1.29e-96 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00608 - - gmx:100801890 1200.65