Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00601 ATGGACTCTACATTGGACTTGAATCCTTTTAGTGACGACAAACATGAAATAATTGAAGATTTCCTTCCAAACATGGAGGAGGATGGCGATACGGCTGTGTATAATAGCTACATTGAGGCAGCTGAGAATTCTATTTCTACCAAGACCATATTTGGGGAGGCACACTTCACCATTTTGGGTGAATCTGACATCAAGCAGCTTCAAGAGGCTGATATCAATCAAGTTTCAACCGTTCTTTTGATATCAAAATTTGTTGCTTGCCTTTTGCTCCATCACTATGAGTGGAGTGTGAATAAAGTGATCGAAGCATGGATTGATAATGAAGAAAGAGTTCGCAACGCTGTAGGGTTGCTTAAACAACCCCAGGTAAATTTTTCTAGCTCAGAAATTTTCATGTGTGGGATCTGTTTCGAAACCCTTTGTGGTGATAAGATTAGGTTAGCAGAGTGTGGACATCCATTTTGCATGATTTGTTGGATGCGCTATGTGGATACAAAGATTGACGAAGGTCCTTATAAGTGCTTGACACTTAGATGCCCCGAACCCTTTTGTGATGCAGCTATGGATGGAGACATGGTTCACAAACTTGCAAGTGAATCAAGTATGAAAAGGTACGATCATTTTTTGTTCCGATCTTACGTGGAAAACAATAAGAAGATTAAGTGCTGTCCTGCTCCTGCTTGTGGGAATGCTGTAAGTTTTGAAGCTGATGGTTATAGAAAAAATTTCGATGTTACATGCCTTTGTTATCATAGTTTTTGCTGGAGATGTGGGGAAGAAGCTCATAGGCCTGTGGATTGTGAAACTGCACACCAATGGATAACAAAGAATATGTCTAAATCTGAGAATGCTGATTGGCTTGTTGCTCATACTAAACCATGTCCTCAGTGCAAGAAACCCATTGAGAGAAATGGGGGGTGCAAAAGAATAAGGTGCAACTGTGGATTTCAATTTTGTTGGTTTTGTCTTGGTGATTGGCTTGCTTCTATATGTTGCAAATGTCATACAATTCAATTTCAAGAGACTAGCAAAGAGGAACTAAAAAGTAAGATGTCAAGGGGTTATTTTGATAGGTACATTTACTATTATCATCATTGGGCTAGAAATGATGTTTTAAGAAAAAATGTCATTGAAAATTTGATTTACCTTACACCTATAAAAAGACTGTGTAGGTTGTTTCAAAGGCCTTCAACTGATTTTAATTTTATAATTGAGGCTTGGAAACAAGTGATTGAATGTAAAGGGGTACTAAAATGGTGTTATACATATGGATATTATCTCCCTGATGATATAAAGGTCAAGAAGGACTTTTTTGAGTACATCCAACATAAAGCTGAGGTTACTTTCGAAAAGCTTGATCAATGTGTAGGAATGGAACTGGAAGGGCATCTAAATGTTAAGCGAAAAGATGACTTAAATGATTTTCGTTTGAAGGTAGTCCAATTGACTAATGTGACCAAGAATTATTTTGACAAGCTGGTGAAAGCGTTAGAGGATGGCCTAGCTGATGTGCACGTGAATAACAACATGAGGGTGAAAAGAAAATCAACTGAGATAGGTGAGACCTCTAATCAAAGGGGGACCAAGAGAATAATTACCATTGATGGACTGACCGATGATGATCTTTGGCAATGTGAGGCATGTGGTCATTACAATTTTGCCGCTTCTCCTGTATGTCAGGATACTAATTGCAGACAATACTCTGATTAA 1710 0.3825 MDSTLDLNPFSDDKHEIIEDFLPNMEEDGDTAVYNSYIEAAENSISTKTIFGEAHFTILGESDIKQLQEADINQVSTVLLISKFVACLLLHHYEWSVNKVIEAWIDNEERVRNAVGLLKQPQVNFSSSEIFMCGICFETLCGDKIRLAECGHPFCMICWMRYVDTKIDEGPYKCLTLRCPEPFCDAAMDGDMVHKLASESSMKRYDHFLFRSYVENNKKIKCCPAPACGNAVSFEADGYRKNFDVTCLCYHSFCWRCGEEAHRPVDCETAHQWITKNMSKSENADWLVAHTKPCPQCKKPIERNGGCKRIRCNCGFQFCWFCLGDWLASICCKCHTIQFQETSKEELKSKMSRGYFDRYIYYYHHWARNDVLRKNVIENLIYLTPIKRLCRLFQRPSTDFNFIIEAWKQVIECKGVLKWCYTYGYYLPDDIKVKKDFFEYIQHKAEVTFEKLDQCVGMELEGHLNVKRKDDLNDFRLKVVQLTNVTKNYFDKLVKALEDGLADVHVNNNMRVKRKSTEIGETSNQRGTKRIITIDGLTDDDLWQCEACGHYNFAASPVCQDTNCRQYSD. 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00601 569 Pfam IBR domain, a half RING-finger domain 203 267 IPR002867 GO:0008270
Seca6g00601 569 ProSiteProfiles Zinc finger RING-type profile. 133 180 IPR001841 -
Seca6g00601 569 SUPERFAMILY RING/U-box 286 329 - -
Seca6g00601 569 ProSiteProfiles TRIAD supradomain profile. 129 346 IPR044066 -
Seca6g00601 569 ProSiteProfiles Zinc finger CCHC-type profile. 254 267 IPR001878 GO:0003676|GO:0008270
Seca6g00601 569 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 420 IPR031127 GO:0004842|GO:0016567
Seca6g00601 569 SUPERFAMILY RING/U-box 127 215 - -
Seca6g00601 569 FunFam RBR-type E3 ubiquitin transferase 127 217 - -
Seca6g00601 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 217 IPR013083 -
Seca6g00601 569 SMART ibrneu5 203 267 IPR002867 GO:0008270
Seca6g00601 569 SMART ibrneu5 276 332 IPR002867 GO:0008270
Seca6g00601 569 SUPERFAMILY RING/U-box 204 274 - -
Seca6g00601 569 Gene3D - 263 504 - -
Seca6g00601 569 CDD BRcat_RBR_ANKIB1 211 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00601 Seca-Chr6 17879960 17881669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00601 53 560 ARIADNE family AT1G65430 43.295 1.75e-152 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00601 K11968 - gmx:100801350 536.569