Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00584 ATGCCAATGGCCACTTTCTGGACCTCACTCTTTTACTTCCTCCTCACCACCACCGTTGCCTCCGGAAGACAATATTATTCCGGCGAGGAGGCACGGCAGCAGGAGGCTGACAGAGTGAAGAACTTGCCGGGACAACCACCAGTGAAATTCAGACACTATGCTGGCTATGTGAAGCTAAGACCACATGAAGAAAAGGCATTGTTCTATTGGTTCTTTGAAGCTCAAGAAGCACCCTCACAAAAACCTCTTGTGCTTTGGCTTAATGGAGGACCTGGTTGCTCGTCCATTGGCTATGGAGCTGCACGAGAGCTTGGTCCATTTCTTGTTGAAGACAAAGAACGCCTCAAACTTAACAAATTCTCTTGGAACAGAGTTGCAAATATCATATTCTTGGAGTCACCAGTTGGTGTTGGGTTTTCTTACACTAACAATTCCAAAGATCTACACGAGCTTGGGGATCGTGTTGCTGCTATTGATAACTATGCCTTCTTGGTTGGTTGGTTCAAAAGATTCCCAAACTTCAAATCCCACGATTTTTATATTGCTGGGGAAAGCTACGGAGGGCATTATGTTCCACAGCTAGCTGAGCTCATCTATGAAAGGAACAAAGATACCAAAAACGGCTCTTACATAAACCTCAAGGGATTCATGGTGGGAAATGCTGTGCTGAATGATCTTACAGATATAAATGGGTTGATAGATTATGCTTGGAGCCATGCCATCATATCAGACCAAGTATATCACGGGATAGTCAAAGACTGTGACTTTAGTAAAGAAAACCAAACAAAGGCTTGCGAGTTGCATGTTCAAGGGTTATTAGAAGCTTACTCCGAGATTGACATATATAGCATTTACTCACCCATTTGCCTCGATGACAATAAAACAAGAGTTTCACCCAAACTTGTGGTTGCTCCTCATCTTCTCACACGGCATGTAAGTCCTCTCGACATGTGGCATACACTACCATCAGGATACGATCCCTGTACAGAGGATTATCTAAGCAAATATTTCAATAATGAGGATGTTCAGAAGGCCCTACATGCCAATATTACCAACTTGTCATATCCCTATACCCTTTGCAGCGCTGTAATTGGGAAATGGAATGACTCGCCAGACACAGTTTTGCCGATTATTCAGAAGCTCCTAAATGCCGGTTTACGCATTTGGATCTACAGTGGGGACACTGATGGTAGAGTTCCGGTGACATCAACAAGATACAGCATAAACAAGATGAGTTTGAAAGTAAAGAAAGGGTGGAGAGCTTGGTTTCACAAACATCAAGTGGCAGGTTGGATGGAAGTGTATGAGAGTGACCTCACTTTTGCAACCATTAGAGGTGCTGGCCACCAAGTTCCTGTCTTTGCACCTCAACAATCCCTTTCTCTCTTCACCCATTTCCTCTCTTCTCAAACCCTCCCTTCTTCTCGCTTCTAG 1434 0.44 MPMATFWTSLFYFLLTTTVASGRQYYSGEEARQQEADRVKNLPGQPPVKFRHYAGYVKLRPHEEKALFYWFFEAQEAPSQKPLVLWLNGGPGCSSIGYGAARELGPFLVEDKERLKLNKFSWNRVANIIFLESPVGVGFSYTNNSKDLHELGDRVAAIDNYAFLVGWFKRFPNFKSHDFYIAGESYGGHYVPQLAELIYERNKDTKNGSYINLKGFMVGNAVLNDLTDINGLIDYAWSHAIISDQVYHGIVKDCDFSKENQTKACELHVQGLLEAYSEIDIYSIYSPICLDDNKTRVSPKLVVAPHLLTRHVSPLDMWHTLPSGYDPCTEDYLSKYFNNEDVQKALHANITNLSYPYTLCSAVIGKWNDSPDTVLPIIQKLLNAGLRIWIYSGDTDGRVPVTSTRYSINKMSLKVKKGWRAWFHKHQVAGWMEVYESDLTFATIRGAGHQVPVFAPQQSLSLFTHFLSSQTLPSSRF. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00584 477 Gene3D - 328 364 - -
Seca6g00584 477 Gene3D alpha/beta hydrolase 33 290 IPR029058 -
Seca6g00584 477 Pfam Serine carboxypeptidase 43 468 IPR001563 GO:0004185|GO:0006508
Seca6g00584 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Seca6g00584 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Seca6g00584 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 439 452 IPR001563 GO:0004185|GO:0006508
Seca6g00584 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Seca6g00584 477 FunFam Carboxypeptidase 33 291 - -
Seca6g00584 477 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 38 456 IPR001563 GO:0004185|GO:0006508
Seca6g00584 477 FunFam Carboxypeptidase 324 472 - -
Seca6g00584 477 ProSitePatterns Serine carboxypeptidases, serine active site. 181 188 IPR018202 GO:0004185
Seca6g00584 477 ProSitePatterns Serine carboxypeptidases, histidine active site. 439 456 IPR033124 GO:0004185
Seca6g00584 477 SUPERFAMILY alpha/beta-Hydrolases 34 474 IPR029058 -
Seca6g00584 477 Gene3D - 374 468 - -
Seca6g00584 477 FunFam Carboxypeptidase 374 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00584 Seca-Chr6 17445061 17452331 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00584 333 472 Calmodulin-binding Proteins AT2G22960 30.496 3.64e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00584 K16297 - gmx:100799746 815.453