Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00582 ATGACACTCCCACGTGCATTTGTAGAGCACTTTCTGAAGCAAGAATGGAGGTTGTTGGTGATACACCCTCATCGGTCAAGAAACTACAAATGCAAGCTGTTGTTGAGGGATAGAAATGAATTTGAATGTCACCTTGCAATGGGGTGCTATCAGTTTGTGAAAAACAAAGGTTTGAAGACTGGAGATAGGGTAGTCTTCGAGACTCGTAGACCCAAAGTTACAATTGTTAGATGTCAACCCGGAGATAATGGAAGGAGGGGAAGGGGTGGTCGTTAA 276 0.4384 MTLPRAFVEHFLKQEWRLLVIHPHRSRNYKCKLLLRDRNEFECHLAMGCYQFVKNKGLKTGDRVVFETRRPKVTIVRCQPGDNGRRGRGGR. 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00582 91 ProSiteProfiles B3 DNA-binding domain profile. 1 79 IPR003340 GO:0003677
Seca6g00582 91 Pfam B3 DNA binding domain 1 73 IPR003340 GO:0003677
Seca6g00582 91 SUPERFAMILY DNA-binding pseudobarrel domain 1 76 IPR015300 -
Seca6g00582 91 Gene3D - 1 79 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00582 Seca-Chr6 17398709 17399344 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca6g00582 B3 8.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00582 - K03628 nau:109239491 35.039