Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00573 ATGGGTGCACCTAAAGTTGCCAGATGTGGAAAAACAAGGAAATCAAAGGTTAAGAATTCAATTTCTAGGCCAGCAGGCAAAGTGGTTAAATTTGATTTGACTGATCTACAATGGACCAATAACATTCCAGAGTGTCCAGTATACCACCCATCAGAAAAGGAGTTTGAGGACCCTTTTCTATATCTACAGAACATTGCTCCAGAGGCATCTAAATTTGGTATATGCAAAATTGTTTCTCCTATAGCTGCCTCTACTCCTGCTGTTGTTGTCTTGACCAAAGAGAAAAAGGACTTCAAGTTTGAAACTAATGTACAGCCTCTTGGGATTTCTGAGTGGAATGAGAAAGACATAGTAACCTTTTCTATGAGAGGAAGGAAATACACATATCATGAATTTGAGGCTCTGGCAAATGATGCTTTTCTCAGTAGATTTTACAGTTTTGGGAGTCTTTCATCTTCATATGTGGAAAAGGAGTTCTGGCATGAGATGGTGTATGGAGAGAAGGGAACGGTTGAGTATGGAGTCAATATTGAGGGTAGTGCCTTTTCATGTGATCCTGATGACAAGCTTGGAAAAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCCACAATCCACATTGCGATTAGTTGACAAGGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGCATGTTTGCATGGCATGTGGAAGATCACTATCTATACAGCATAAATTATCACCATTCAGGTGCTAATAAAATTTGGTATGGAGTGCCTTCCCATGAAGCCTCTCAATTTGAAAATGTTGTCTTACATAATGTGTATTGCAATAAAATCTTACCAAAACATGGAGAAGATGGGGCTTTCCAACTTCTTGCACATAAAACAACCATGCTCCCTCCAATTGTCTTGCTACAAAATGATGTGGCAGTTTACAAGGCTATCCAGAAGCCAGGAGAGTTTGTCATTACCTTTCCTAAAGCATATCATGCTGGATTTAGTACTGGTTTTAACTGTGGAGAAGCAGTGAACTTTGCTATTGGTGATTGGTTTCCATTAGGGGCTGAAGCTAGTAAACGTTATGCACATCTCAGAATGTTTCCTATTATTCCACATGAGGAACTTCTTTGTAAAGAGGCAATGCAGATTTACAAGTCCTTAAAAGTCAGAGGTTCAAAGAACAAACTTAAGGACTTAGCATCTTATCATGCTACTATACTGTCTTTCATGCATCTTATGCAATTTTATAAGAAGGCCCTTTTGAGACTGAACAGTTCAATAGAGTGTTCAAGTTCTTCAAATACCATAGGTACCCTGATATGCCATGACTGCCACAGGGATTGTTATGTAGCTTACATGCTGTGCAAGTCATGTTATTCTTATCCAATTTGTCTTTATCATGATATTGCATCACAAAAGTGCTCTTGTGGGAGAAAATATACTATTTTCAAGAGAGATGACATGTTGTCAATGGAAAATGCTGCCAAAAAATTTGAACAGGAAAATGATATTCATTTGCAAGTTCAGAGAAAAATTAGTTGTAATTGTGGAGCAAACACATCAGTTCTATCAAGTACATTCTCCTGTATCAGAAATGAATGTGTCCAAGATCTCCAGAAAAAACCCTGGCATGAAGAGACAGATACCAGAAGAAGTGCTAATTTTCTAGGATCAGTGTCTAAACGAAAAACAAGAGAAGTGGACAGCATCAAGCTCAATGTTGAAAAGATGAACAAGACAACAATTAAGCATTGTGGAAAATAA 1764 0.3798 MGAPKVARCGKTRKSKVKNSISRPAGKVVKFDLTDLQWTNNIPECPVYHPSEKEFEDPFLYLQNIAPEASKFGICKIVSPIAASTPAVVVLTKEKKDFKFETNVQPLGISEWNEKDIVTFSMRGRKYTYHEFEALANDAFLSRFYSFGSLSSSYVEKEFWHEMVYGEKGTVEYGVNIEGSAFSCDPDDKLGKSKWNLKNFSRLPQSTLRLVDKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKIWYGVPSHEASQFENVVLHNVYCNKILPKHGEDGAFQLLAHKTTMLPPIVLLQNDVAVYKAIQKPGEFVITFPKAYHAGFSTGFNCGEAVNFAIGDWFPLGAEASKRYAHLRMFPIIPHEELLCKEAMQIYKSLKVRGSKNKLKDLASYHATILSFMHLMQFYKKALLRLNSSIECSSSSNTIGTLICHDCHRDCYVAYMLCKSCYSYPICLYHDIASQKCSCGRKYTIFKRDDMLSMENAAKKFEQENDIHLQVQRKISCNCGANTSVLSSTFSCIRNECVQDLQKKPWHEETDTRRSANFLGSVSKRKTREVDSIKLNVEKMNKTTIKHCGK. 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00573 587 SMART cupin_9 192 362 IPR003347 -
Seca6g00573 587 Pfam jmjN domain 46 78 IPR003349 -
Seca6g00573 587 Gene3D Cupin 45 408 - -
Seca6g00573 587 SUPERFAMILY Clavaminate synthase-like 123 384 - -
Seca6g00573 587 ProSiteProfiles JmjN domain profile. 45 86 IPR003349 -
Seca6g00573 587 PANTHER LYSINE-SPECIFIC DEMETHYLASE 38 530 - -
Seca6g00573 587 Pfam JmjC domain, hydroxylase 222 345 IPR003347 -
Seca6g00573 587 ProSiteProfiles JmjC domain profile. 192 362 IPR003347 -
Seca6g00573 587 SMART JmjN_1 44 85 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00573 Seca-Chr6 16929574 16933228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00573 41 503 JUMONJI Transcription Factor Family AT2G34880 31.391 3.62e-66 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca6g00573 JmjC 6.6e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00573 - - cam:101502558 795.423