Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00564 ATGTCCATGTTCGAAGAAAATGAGACATCTATGGGTTTGGACGATATAACCTCTCAACAGGGTGACGATTATGACGGTAGTCGAGGTCCATGTGATGATGCTATTGGGTTTGACGAAGGTGAAGAATTATTAAGTGAAGAAAGTGTACAAGATGATTGTTTTGAAGATGTTATTATGATAGATGATTTTAATGATATTAAGAAGATTGATATGAAAAATATCAGTGAAGATGATCTTCGTAAATATGATTTTGCCGATCTAGATGTGGCCCACAATTTCTACATATGGTATGGTAGGTCGAATGGGTTCTCTGTTCGTAAAAGCAATGTAGTACCGAATAGTAAGGGTGACATTTTCCAGCAAACATTTGTTTGTTCTGCACAAGGACATAGAAGGGCTAGACGTTCCACAAGAAGTTCTAAAAAGAGACAATCGAAACCGCTAACAAGGTTTGATTGTAAAGCAATGTTTCGTGTTCACATCAACGTTAACTCAAGCCGATGGTATGCGACGATATTTGATGATATTCACAATCACAATTTGTTGGAAGAACAACATTGTGGCATGTTACCAGCATATAGAAAGAGGACAGAATCTGACATTATGCAAATTAACAATTTCAGAGAAGTTGGGATAAGACCCCCTCATATCTATGGTTCATTTGCTAGGCAGTCAGGGGGCTACCAGAAGATTGGATTTCTGAAGAAAGATATTTATAATGAGATAGGCAGACAAAGACAACAACAAGCTTCTGATGCTAGTGGTGCTCTGGAGTATCTTCGACAGTTGCGGTTGAAAGACAATTTGATGTTTTACAAACACATAACAGACGAGGATGGGAGACTCCGGCACCTATTCTGGTGTGATGGGGAAAGCCAAATGAACTACCAAGTTTTTGGTGATGTGTTAGCCTTTGATGCTACTTATCGCAAGAACAAGTACATGTGTCCTGTAGTGATCTTCTTTGGCGTTAATAACCATAATCAGACCATTGTATTTGCAAGTGCTATTGTATCTGATGAGACAGAACAAACATATGTTTGGTTGCTGGAACAACTTGCACAAGTAATGAAAGGTAAGGCACCATCATCAGTAATAACTGACAGTGATTTGGCAATGAGGAACGCAATAAAGAAAGTATTTCCTAATGCGCACCACAGGTTATGTGCTTGGCATTTGCTTCGCAATGCAACAAGCAATGTTGGAATTCCTGATTTCATGGCTTATTTCAAGAGGTGTATGTTGAGTGATTGGGTTGTGGCTGAATTTGAGCAAAGGTGGAACAACATGCTTTCCATGTTCGGTTTGGAAGACAATACATGGCTTAGGGAAATGTATGAGAAGAAAAATATGTGGGCTACAGCTTATATCCGAGGGCAATTTTTTGCTGGTATAAAGACTACATCTCGTTGTGAAGCTTTGCATTGTCACTTAGGCAAAGAAGTGGAAGCTGACTTTAGATCCGTGCATGGTGAGCCAGTGTTGCAAACAAATTTTCATACCCTTGAGAGATATGCAACTTTGCTTGAACTTTGTAGAGAATTGTCTGAACTTGCATCTCATGATGATGATGACTATAACCATATAGTTAATTTGGTTACTAATGAACTTCATAAGCTGAGGCGAAAGAATAGGGTTGCAGGTGTTATTGACAATAATGCATCACAAAATATGCATGGAAACTTACGAGATCCAGCACCTGTCAGAAGCAAGGGATGTGGTCCAACCACAGCTGCTACATCAACAAGATGCAAGCGGGGTCATCATTGTGGTATTTGTGGTGCCAGTGGTCACAATAGGAGGTCGTGTCCAATTGGTAGACAAAATGTTGAAATGACCCCCTCCACTTCCAGGCATCCGTTTGTAGGTGAAGATGAAGGTTCCTTTTATCACTATAACAACCTAAATAGTGGCTTGGATTCTTCCCAGTTACATGAACAACCGCACATGTTTGCATATTCAACCAGTCAAGATGTTGATGGAGGGCAATAA 1992 0.3981 MSMFEENETSMGLDDITSQQGDDYDGSRGPCDDAIGFDEGEELLSEESVQDDCFEDVIMIDDFNDIKKIDMKNISEDDLRKYDFADLDVAHNFYIWYGRSNGFSVRKSNVVPNSKGDIFQQTFVCSAQGHRRARRSTRSSKKRQSKPLTRFDCKAMFRVHINVNSSRWYATIFDDIHNHNLLEEQHCGMLPAYRKRTESDIMQINNFREVGIRPPHIYGSFARQSGGYQKIGFLKKDIYNEIGRQRQQQASDASGALEYLRQLRLKDNLMFYKHITDEDGRLRHLFWCDGESQMNYQVFGDVLAFDATYRKNKYMCPVVIFFGVNNHNQTIVFASAIVSDETEQTYVWLLEQLAQVMKGKAPSSVITDSDLAMRNAIKKVFPNAHHRLCAWHLLRNATSNVGIPDFMAYFKRCMLSDWVVAEFEQRWNNMLSMFGLEDNTWLREMYEKKNMWATAYIRGQFFAGIKTTSRCEALHCHLGKEVEADFRSVHGEPVLQTNFHTLERYATLLELCRELSELASHDDDDYNHIVNLVTNELHKLRRKNRVAGVIDNNASQNMHGNLRDPAPVRSKGCGPTTAATSTRCKRGHHCGICGASGHNRRSCPIGRQNVEMTPSTSRHPFVGEDEGSFYHYNNLNSGLDSSQLHEQPHMFAYSTSQDVDGGQ. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00564 663 Pfam FAR1 DNA-binding domain 92 182 IPR004330 -
Seca6g00564 663 ProSiteProfiles Zinc finger CCHC-type profile. 590 604 IPR001878 GO:0003676|GO:0008270
Seca6g00564 663 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 82 504 IPR031052 GO:0006355
Seca6g00564 663 MobiDBLite consensus disorder prediction 1 28 - -
Seca6g00564 663 MobiDBLite consensus disorder prediction 555 574 - -
Seca6g00564 663 Pfam MULE transposase domain 302 396 IPR018289 -
Seca6g00564 663 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00564 Seca-Chr6 16718137 16722904 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g00564 MULE 1.6e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00564 - - tpra:123884554 550.051