Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00541 ATGGGTGAGGACGATGAAATAACATCAGAAAATAATAGTCTTGCATGTATACAAAGTGAAGAACCTTATACCCCACATGATGTCGATACTTCATTAACAGAATGTGATATAGTTTTTGAACCACAAGAGGGAATGTCATTCAAATCTGTGGAGGAATTCAAAGACTTTTACAAAAAATATGCCTTTCAACAAGGGTTTGGTTTTGTGATAAGAACCTCAAGAAAGAACTCTTCTGGCTGTGTTTGTAACCTTGTATTAGCATGTGCACGCCAAGGACACAGCAAATCAACCGTGAAGAACTCTTTCAAAAGTGTGTCATCAATCAAAGCTGATTGTGGAGCACATGTTACTACTTCCTTGAAGTCTGATGGGTTGTATTACATAGCCAAGATCATTCTTCATCATTCTCATGATCTGAGCCCAAGCAAAGCAAGATTGTTCAAGTCAAACAAAGAGATGAGCATGCATGTAAGGAGAGTCTTGGATGTCAATGATAGGGCAGGGGTGAGATTGAACAAAAGCTTTAATTCCATTGTTACAGATGTGGGGGGCTATGAAAATTTGCCTTGTATTGAGAGAGATGCGAGGAATTATATTATAAAGGAAAGACGAGCAATTGATGCAAGAAGTAGGGCAACATATGTGTCATTTGGTGATGTGATTACATTTGATACAACTTATCTTACAAATAAGTATGATATGCCATTTGCTGCATTTGTTGGGGTTAATCATCATGGCCAATCGGTACTACTTGGATGTGGGTTGCTATCTAGTGAAGACACTGCAGGATTTTTGTGGTTATTTAGATCATGGTTACGGTGCATGTCAGGCATTCCTCCCCAAGCAATCATAACTGATCAATGTTATGCTGTGAAAAATGCAACTGAGATAGTGTTTCCCAGTACACATCGTAGATGGTGCTTATGGCATATACTGAAGAAATTACCCCAAAAGCTTTCAAGGCATAGTGAATACCTTGCAGTTATTTCTCAATTACAAGCTGCAATTTACGATACATACACACCGGCTGAGTTTGAAGAACAGTGGGAAAAGGTGATTAATAAATATAATTTGCAAGAGAATGATTGGCTTAGGGGTTTGTATGCTGAACGTCATTGGTGGATACCTATATTCTTGAAACATCATTTTTGGGTAGGAATGTCAACTACACAACGTAGTGAGACTATTCATGTTTTCTTTGATGGATATGTCCACCATTCAACTACCTTGGAGCAATTTGTTAACCAATATGACAATGCACTTCGAGACAGGGCAGAAAAGGAGTTCCAAGCTGATTTTCAATCTTTAAATAGCAAAGTGTCTTCTAATACAAAGTCTCCAATTGAAAGACAATTTCAAGCAAATTATACTCATAAAAAATTCAAAGAGGTCCAAGCCGAGTTCAGGGCTACAACTGATTGTCATGCATCATTAACACTACAAGAAGGTTGTGTATGCACTTACAATGTAGTGGAGGACATGGTTTTTGGGGATAAACCTAAAGAAGTTGACTTTATTATGGTTTTTAATAGAGAAAACCATGATATCAAGTGTAAATGCCTGTTATTTGAATTTCGAGGCATTATGTGTAGGCATTCTCTTGCTGTGCTTGGTATAGAAAGGGTGAAAGAAGTGCCTTCTAAGTATGTTTTATCAAGGTGGAGCAAGAACATGAAAAGAAGACACACATATATTAAGAGTAGCTATGATGTTAAGCAATTAAAGCCTCAAATGCAAAGATTTGATGAATTATCTAAGAACTTTTATGAAGTTGGTGAAGTTGCTGCAGAATATGAAGACACGACTAATTTTCTACAAGAGTTGTTACATGAAGCAATGATCAAATTGAAGGTGATGATTGCATCTACTAAACAGACTCAAATATGCATTGTTTGTCCTACTTGCAATGTCAATGTAATTTGTGACACGCCAATGGTGAGTGAAACCATTCATAGTCCAAAGGCAGTACGTCGTGTAGGTCGCCCTGCTTCAAAAAGGAAAGTCTCAATATTTGAGAAAGCTATCAAAAGTTCGAAGAACAGAAGGAAGATGATGAAATCCAATCAAATGCAACAGCAAATGATATTTTTTTTTTATTAG 2100 0.37 MGEDDEITSENNSLACIQSEEPYTPHDVDTSLTECDIVFEPQEGMSFKSVEEFKDFYKKYAFQQGFGFVIRTSRKNSSGCVCNLVLACARQGHSKSTVKNSFKSVSSIKADCGAHVTTSLKSDGLYYIAKIILHHSHDLSPSKARLFKSNKEMSMHVRRVLDVNDRAGVRLNKSFNSIVTDVGGYENLPCIERDARNYIIKERRAIDARSRATYVSFGDVITFDTTYLTNKYDMPFAAFVGVNHHGQSVLLGCGLLSSEDTAGFLWLFRSWLRCMSGIPPQAIITDQCYAVKNATEIVFPSTHRRWCLWHILKKLPQKLSRHSEYLAVISQLQAAIYDTYTPAEFEEQWEKVINKYNLQENDWLRGLYAERHWWIPIFLKHHFWVGMSTTQRSETIHVFFDGYVHHSTTLEQFVNQYDNALRDRAEKEFQADFQSLNSKVSSNTKSPIERQFQANYTHKKFKEVQAEFRATTDCHASLTLQEGCVCTYNVVEDMVFGDKPKEVDFIMVFNRENHDIKCKCLLFEFRGIMCRHSLAVLGIERVKEVPSKYVLSRWSKNMKRRHTYIKSSYDVKQLKPQMQRFDELSKNFYEVGEVAAEYEDTTNFLQELLHEAMIKLKVMIASTKQTQICIVCPTCNVNVICDTPMVSETIHSPKAVRRVGRPASKRKVSIFEKAIKSSKNRRKMMKSNQMQQQMIFFFY. 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00541 699 SMART 26again6 516 543 IPR006564 GO:0008270
Seca6g00541 699 Pfam FAR1 DNA-binding domain 55 140 IPR004330 -
Seca6g00541 699 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 33 616 IPR031052 GO:0006355
Seca6g00541 699 Pfam SWIM zinc finger 515 537 IPR007527 GO:0008270
Seca6g00541 699 ProSiteProfiles Zinc finger SWIM-type profile. 505 541 IPR007527 GO:0008270
Seca6g00541 699 Pfam MULE transposase domain 220 314 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00541 Seca-Chr6 16386105 16389041 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g00541 MULE 1.9e-32 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00541 - - psat:127087122 717.613