Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00538 ATGGATTGTACAGCTGCAAGAAAGACACAAAAGGCTGACCGGGAAAAGTTAAGGAGGGATAGACTCAATGAACAGTTTGTAGAACTTGGTAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGACACAATTCAATTGCTGAAGGACCTTACTTCTCAAGTCAGTAAACTCAAAGATGAATATGCTATGCTAAATGAAGAATCTCGTGAGTTGTCTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCGGATATTGAGAACTTGAATAATCAGTACCAGCAGCAACTCAGGACTATGTTTCCATGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATATCCATATCCAGTGCCAATGGCAGTACCTCCTGGTCCAATCCCCATGCAGCCCTACCCATTCTATGCTAATCAACATCCTGCAGTCATTCCTAACCCCTGTTCAACATATGTTCCTTATATAGCCCCCAATACCCTCGTTGAACAGCAATCCACTCAGTTTGTATCCCCACCACTTCATCCAGGTAGTCGGTCCCATGTGTCAGGAAAACAAGACTCCAAAAACAAATCATCCAGAGAGAGCAAGGCTGAAAAAAATGAGGACTCTAATGATGTCACTACAGACCTTGAGTTGAAGACTCCCGGGTCTTCTGCAGACCAGGATTTATCATCTGGACAAAGAAAATCCAGCAAGGTATCAAGGAAAGAAAGCAGTTTCACAGAAGGTAGCTCATTAGGTAGGTGTTCTTCATCTCATAGTGTTCAGGATAGCTCATCAAGTAGTGTAGGTGGGAGCAGAAAGACTAATGAATAA 849 0.424 MDCTAARKTQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATILGDTIQLLKDLTSQVSKLKDEYAMLNEESRELSQEKNDLREEKASLKSDIENLNNQYQQQLRTMFPWTAMDHSVMMAPPSYPYPVPMAVPPGPIPMQPYPFYANQHPAVIPNPCSTYVPYIAPNTLVEQQSTQFVSPPLHPGSRSHVSGKQDSKNKSSRESKAEKNEDSNDVTTDLELKTPGSSADQDLSSGQRKSSKVSRKESSFTEGSSLGRCSSSHSVQDSSSSSVGGSRKTNE. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00538 282 Coils Coil 5 25 - -
Seca6g00538 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 76 IPR036638 GO:0046983
Seca6g00538 282 MobiDBLite consensus disorder prediction 176 282 - -
Seca6g00538 282 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Seca6g00538 282 PANTHER TRANSCRIPTION FACTOR BHLH121 2 281 IPR044579 GO:0003700|GO:0006879
Seca6g00538 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Seca6g00538 282 SMART finulus 12 62 IPR011598 GO:0046983
Seca6g00538 282 MobiDBLite consensus disorder prediction 220 239 - -
Seca6g00538 282 CDD bHLH_AtILR3_like 11 85 - -
Seca6g00538 282 MobiDBLite consensus disorder prediction 248 282 - -
Seca6g00538 282 Coils Coil 46 108 - -
Seca6g00538 282 MobiDBLite consensus disorder prediction 192 219 - -
Seca6g00538 282 Gene3D - 5 89 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00538 Seca-Chr6 16361401 16363279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00538 4 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 63.052 5.90e-98 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca6g00538 HLH 3.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00538 - - cam:101491902 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00538 6 16361401 16363279 Seca6g00538 6 16361401 16363279 ECH