Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00531 ATGAATTCAGCTAACACCCAGGTTATAATGGATGGACAACATCCGGGGTATGTTCATCAAACTTGCAAGGCAATCTGTGTAGGGGGCAAGAACTCTTTAAGGAAAAAGTTTCTTACTTCCATTGGAGCACATGAGATTTTTAGACCAGAGACGTGGAAAGCAGCATTGACAGAGTTAGTTGCAACTGCCTCTCTAATGTTCACATTGACCACTTCCATTATTTCATGCTTGGACTCACATGAAGTAGATCCTAAGCTTCTTGTTCCCTTTGCAGTATTCATCATAGCCTTTTTGTTCCTAATTGTGACAGTGCCACTGACTGGGGGACACATGAGCCCTGTTTTCACATTCATCGCTGCTCTAAGAGGTGTTGTGACTCTTACTCGTGCCCTCCTTTATCTGTTAGCACAATGCATTGGCTCAATAATTGGTTTCTATATACTAAAGTGTGTGATGGATCCAAAATTAGTATACACATATTCTTTGGGAGGTTGTGCTATTGGTGGCAAAGGAGTAAATTATGGTATAAAGCAACATGATGCCTTGTTGTTGGAATTTACATGTACATTTGTGGTGCTTTTTTTGGGTGTCACATTGTCATTTGACAAGAAAAGGTCCAAGGATTTAGGCTTGTCAATGGTATGCTTGGTGGTAGCAGGAGCCATGGCACTGGCAGTATTTGTGTCCATAACTGTAACTGGGCGGGCTGGGTATGCTGGTGTTGGGCTTAACCCAGCAAGATGCTTAGGCCCAGCGTTGCTTCATGGAGGCTCACTCTGGAACGGACATTGGGTTTTCTGGCTTGGGCCTTTCTTGGCCTGTTTAATCTATTATAGTGTTTCTATAAACTTGCCTAAGGAGGGTTTGGTTTGGGTTGATGGAGAATATGATATATTAAAATTGGCTCTGGGCTCTTGTGGGACTGTTTCTAACGGTGCCGTTTCAAACGATCATGTAATAGAAGGGAGTGGAGGGTTCCAAGTCCATGTATGA 993 0.43 MNSANTQVIMDGQHPGYVHQTCKAICVGGKNSLRKKFLTSIGAHEIFRPETWKAALTELVATASLMFTLTTSIISCLDSHEVDPKLLVPFAVFIIAFLFLIVTVPLTGGHMSPVFTFIAALRGVVTLTRALLYLLAQCIGSIIGFYILKCVMDPKLVYTYSLGGCAIGGKGVNYGIKQHDALLLEFTCTFVVLFLGVTLSFDKKRSKDLGLSMVCLVVAGAMALAVFVSITVTGRAGYAGVGLNPARCLGPALLHGGSLWNGHWVFWLGPFLACLIYYSVSINLPKEGLVWVDGEYDILKLALGSCGTVSNGAVSNDHVIEGSGGFQVHV. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00531 330 PRINTS Major intrinsic protein family signature 53 72 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00531 330 PRINTS Major intrinsic protein family signature 225 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00531 330 PRINTS Major intrinsic protein family signature 92 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00531 330 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00531 330 PRINTS Major intrinsic protein family signature 129 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00531 330 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00531 330 Pfam Major intrinsic protein 48 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00531 330 PANTHER AQUAPORIN-LIKE 29 304 - -
Seca6g00531 330 Gene3D Glycerol uptake facilitator protein. 38 284 IPR023271 -
Seca6g00531 330 SUPERFAMILY Aquaporin-like 49 276 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00531 Seca-Chr6 16264097 16267337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00531 45 293 Major Intrinsic Protein MIP AT2G36830 30.000 1.86e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00531 K09866 - gmx:100804160 518.079