Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00530 ATGGATTCACCGAATTCCCAAGTATGGTACTCGGTTCGTAAGAATCCTTCAGAGGCCAAATTTCTTGCTTCCATTGGTGCCCATGAAATTTTATCAGTAGAGACGTGGAAAGCAGCTTTGACAGAGTTAGTTGCAACTGCCTCTCTAGTGTTCATCCTCACGAGTTCCATTATTGCATGTTTGGAATCACATGAGGTCAACCCTAGGCTTATCATTCCCTTTGCAGTGTTCATCATAGCCTTTTTGTTCCTAATTGTGACAGTTCCACTATCTGGGGGGCACATGAGCCCTGTTTTCACCTTCATCGCTGCTCTAAAAGGTGTTGTGACTTTTTCTCGTGCTCTCCTTTATGTGTTAGCACAATGCATTGGCTCAATAATCGGTTTCTATATACTAAAGTCTGTGATGGATCCAAAATTAGTATTTACATATTCTTTGGGAGGTTGTGCCATTGGTGAGAAAGGACAAAGTTCTAGTATAAAGCAACAAGATGCTCTGTTGTTGGAATTTGCATGTACTTTTGTGGTGCTCTTTGTGGGTCTCACCAATGCATTTGACAAGAGAAGGTGCAAGGAATTGGGATTGCCAATGGTTTGTATGGTGGTAGCAGCATCCATGGCATTGGTAGTTTTTGTTTCCATAACTGTAACTGGCCGGGCTGGTTATGCTGGTGTTGGGCTTAACCCAGCAAGGTGCTTAGGCCCAGCATTGATTCATGGAGGCTCACTTTGGAACGGGCATTGGGTTTTCTGGCTTGGGCCTTTCTTGGCCTGTATAATCTATTATACTGTCTCTGTTAACCTACCAAAGGAGGGTTTGGATTGGGTTGATGGAGAATATGATATCTTAAAGTTGACTCTGGGTTCTCGTCGGACTGTTCCCAACAGTGTCGTTTCGTCGACCCAAATATAA 912 0.4353 MDSPNSQVWYSVRKNPSEAKFLASIGAHEILSVETWKAALTELVATASLVFILTSSIIACLESHEVNPRLIIPFAVFIIAFLFLIVTVPLSGGHMSPVFTFIAALKGVVTFSRALLYVLAQCIGSIIGFYILKSVMDPKLVFTYSLGGCAIGEKGQSSSIKQQDALLLEFACTFVVLFVGLTNAFDKRRCKELGLPMVCMVVAASMALVVFVSITVTGRAGYAGVGLNPARCLGPALIHGGSLWNGHWVFWLGPFLACIIYYTVSVNLPKEGLDWVDGEYDILKLTLGSRRTVPNSVVSSTQI. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00530 303 Pfam Major intrinsic protein 30 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00530 303 PANTHER AQUAPORIN-LIKE 13 286 - -
Seca6g00530 303 Gene3D Glycerol uptake facilitator protein. 22 270 IPR023271 -
Seca6g00530 303 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00530 303 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00530 303 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00530 303 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00530 303 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00530 303 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00530 303 SUPERFAMILY Aquaporin-like 33 261 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00530 Seca-Chr6 16172033 16173078 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00530 14 260 Major Intrinsic Protein MIP AT3G53420 28.295 2.94e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00530 K09866 - gmx:100797262 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00530 6 16172033 16173078 Seca6g00530 6 16172033 16173078 ECH