Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00528 ATGGATCGAGCAGTTGATATTGATGAACGATTTTCTCTGCATGCTCAAAGTCGTGAGGCAAGGTCGTCCTTCGTAACTAAGAAGCCCTTAGGCTCGAAATTTCTTTCCTCCATTGGTGCCCATGAATTTTTTACATTAGAGACATGGAAAGCAGCATTGACAGAGTTAGTTGCAACTGCCTCTCTAATGTTCATCTTGACGAGTTCCATTGTTGCATGTTTGGAGTCACATGAGGTCAATCCTAAGCTTATTATTCCCTTTGCAGTGTTTATCATAGCCTTTTTGTTCCTAATTGTGACAGTGCCACTATCTGGGGGACACATGAGCCCTGTTTTCACATTCATCGCTGCTCTAAAAGGTGTTGTGACTCTTTCTCGTGCTTTCCTTTACGTGTTAGCTCAATGCATTGGCTCAATAATCGGTTTCTATATACTAAAATGTGTGATGGAGCCAAAATTAGTAGATACATATTCGTTGGGTGGTTGTGCCATTGGTGAGAAAGGACAAAGTTCTAGTATAAAGCAACAAGATGCTCTGTTGTTGGAATTCTGTTGTACATTTGTGGTACTCTATGTGGGTCTCACCAATGCATTTGACAAGAGAAGGTTCAAGGAGTTGGGCTTGCCAATGGTTTGTATGGTGGTAGCAGCATCCATGGCACTGGTAGTTTTTGTGTCCATAAGTGTGACTGGGCGGGCTGGTTATGCTGGTGTTGGGCTTAACCCAGCAAGATGCTTAGGCCCAGCATTGCTTCATGGAGGCTCACTTTGGAACGGGCATTGGGTTTTCTGGCTTGGGCCTTTCTTGGCCTGTATAATCTATTATAGTGTCTCTGTCAACCTACCAAAGGAGGGTTTGGATTGGGTTGATGGAGAATATGATATCTTAAGATTGGCTCTGGGTTCTTGTGGGACTGTCTCTAACAGTGCTGTTTGA 936 0.4359 MDRAVDIDERFSLHAQSREARSSFVTKKPLGSKFLSSIGAHEFFTLETWKAALTELVATASLMFILTSSIVACLESHEVNPKLIIPFAVFIIAFLFLIVTVPLSGGHMSPVFTFIAALKGVVTLSRAFLYVLAQCIGSIIGFYILKCVMEPKLVDTYSLGGCAIGEKGQSSSIKQQDALLLEFCCTFVVLYVGLTNAFDKRRFKELGLPMVCMVVAASMALVVFVSISVTGRAGYAGVGLNPARCLGPALLHGGSLWNGHWVFWLGPFLACIIYYSVSVNLPKEGLDWVDGEYDILRLALGSCGTVSNSAV. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00528 311 Pfam Major intrinsic protein 45 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00528 311 Gene3D Glycerol uptake facilitator protein. 35 283 IPR023271 -
Seca6g00528 311 PANTHER AQUAPORIN-LIKE 25 300 - -
Seca6g00528 311 PRINTS Major intrinsic protein family signature 50 69 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00528 311 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00528 311 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00528 311 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00528 311 PRINTS Major intrinsic protein family signature 261 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00528 311 PRINTS Major intrinsic protein family signature 222 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g00528 311 SUPERFAMILY Aquaporin-like 46 273 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00528 Seca-Chr6 16048899 16050068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00528 18 271 Major Intrinsic Protein MIP AT3G61430 26.642 1.90e-23 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00528 K09866 - gmx:100797262 470.7