Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00524 ATGAAGGAAGAGAAAGTCGATGAGGAGGTGATAAAGGTGAAGATGGTAGTGAGACCCTCTCACTTTCCCCCTCTTCCCCCTAAGAACGGTTTCTGTTCCAATTTGACTTTGAGGTGCGAGATCAAAAGCTTCGAGAGCCATCGTAACTGGACAATCGAGCACGTCTCCGATATGAACAAAGACTCCATTCGCAACAACTCTTCCTCCTCTTCTTCGTTGCTCTCTGCTTCAGCATTCCACACCAAGAATGCCAAGAAGGTGGTCCTCTTTTACTGCGCCGAGACCAAAGTCCTCGCCGACAAAATTGTCGTCGAGTTTGACACCATTGAACTTCGCACCATCTCATGGGGCAAATTTCCTGATGGCTTCTCCAACATTTTCATTCTTAATGCTCAAAGCATTCATTTCATCTCTCTGTTTGATAAGGAAATTGAAGATGCAGTTCACCTGTTTGATAAATTTCCCTACAAACATTTGTCCATCGAGGCTCTGAAGAAGTGGTCAAAGCAGATTTTGGAAGGGTTGAATTATCCGCATCTGCATGACCCCTGTATCATCCACAGAGACCTCAATTGCAACAATGTTTTTTTCAATGGGAATATTGGCCAGGTTAAGATTGGTGACTTTAGTTTGGCAACAATTGTAGGCAAGAACCACTGCATTTATGGCACCTGA 675 0.4415 MKEEKVDEEVIKVKMVVRPSHFPPLPPKNGFCSNLTLRCEIKSFESHRNWTIEHVSDMNKDSIRNNSSSSSSLLSASAFHTKNAKKVVLFYCAETKVLADKIVVEFDTIELRTISWGKFPDGFSNIFILNAQSIHFISLFDKEIEDAVHLFDKFPYKHLSIEALKKWSKQILEGLNYPHLHDPCIIHRDLNCNNVFFNGNIGQVKIGDFSLATIVGKNHCIYGT. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00524 224 ProSiteProfiles Protein kinase domain profile. 1 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00524 224 SUPERFAMILY Protein kinase-like (PK-like) 154 218 IPR011009 -
Seca6g00524 224 Gene3D Transferase(Phosphotransferase) domain 1 76 223 - -
Seca6g00524 224 Pfam Protein kinase domain 156 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g00524 224 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 157 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00524 Seca-Chr6 15789679 15790458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00524 156 219 MAP Kinase Kinase Kinase AT5G55560 76.562 3.95e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca6g00524 Pkinase 5.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00524 K08867 - lja:Lj2g3v1415430.1 146.747