Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00509 ATGGCTTTCATTAATCTTTGTTTCTTCATTTTCCTTCTTGCTTCATCTGCTTCTGCTTGTGATCGCTGCATCCACCAAACCAAAGCTGCCTATTTCTCCAAAGCCTCTGCTCTTTCATCTGGGGCATGTGGGTATGACTCTTTGGCATTGGGATTAAGTGGTGGACACCTTGCTGCTGGTGTGCCTTCTCTCTTTAAAGATGGAGCTGGTTGTGGTGCTTGTTTTCAGATAAGATGCAAGAACCCAACTTTATGCACAAAAGAAGGGACCAGAGTGGTGTTGACTGATCTTAATCACAATAATGAAACTGATTTTGTTCTCAGCAGCAGAGCCTTTGCAGCCATGGCTCAGAAGGGGATGGGCCAACAGATTTTGAAGCTTGGCATTGTTGACATTGAATACAAAAGGTAA 411 0.438 MAFINLCFFIFLLASSASACDRCIHQTKAAYFSKASALSSGACGYDSLALGLSGGHLAAGVPSLFKDGAGCGACFQIRCKNPTLCTKEGTRVVLTDLNHNNETDFVLSSRAFAAMAQKGMGQQILKLGIVDIEYKR. 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00509 136 Gene3D - 12 136 IPR036908 -
Seca6g00509 136 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 136 IPR007112 -
Seca6g00509 136 Pfam Lytic transglycolase 58 134 IPR009009 -
Seca6g00509 136 PANTHER EXPANSIN-B3 12 136 - -
Seca6g00509 136 PRINTS Expansin/Lol pI family signature 127 136 IPR007118 GO:0005576
Seca6g00509 136 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Seca6g00509 136 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Seca6g00509 136 SMART dpbb_1 58 134 IPR007112 -
Seca6g00509 136 CDD DPBB_EXLA_N 15 136 - -
Seca6g00509 136 SUPERFAMILY Barwin-like endoglucanases 9 136 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00509 Seca-Chr6 15200225 15202749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g00509 2 136 Expansin Gene Family AT3G45960 60.584 9.86e-46 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g00509 - - gmx:100305884 228.409